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Sample GSM4634 Query DataSets for GSM4634
Status Public on Feb 27, 2003
Title 6hr MK-CA1 vs 6hr MK C+S-CA1
Sample type RNA
 
Channel 1
Source name CA1 Hippocampus, 6hr MK-CA1 was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name CA1 Hippocampus, 6hr MK C+S-CA1 was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 6hr after MK experimental mice received their last shock treatment.
MK C+S: MK-801 & Context + Shock: Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight) 1hr prior to contextual fear conditioning that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted 6hr after the last shock treatment.
 
Submission date Feb 26, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE317 MK-CA1 vs MK C+S-CA1
GSE1782 A Bioinformatics Analysis of Memory Consolidation Reveals Involvement of the Transcription Factor c-Rel

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 20757.6 35009.1 34526 1678.1 2592.96 2591.5 47.8977 10951.5 19018.9 18672 855.204 3010.65 3010.5 71.2335 -0.277705 0
2 94.1267 2435.15 2425.5 58.6677 2563.37 2565.5 46.4552 119.284 2657.73 2660.5 66.6012 2969.93 2971 52.5346 0.102871 0
3 166.33 2502.62 2504.5 48.0425 2535.37 2533 44.8869 291.036 2934.27 2941 63.7536 2928.38 2929 55.2901 0.242975 0
4 166.736 2489.04 2460 86.3358 2523.84 2525 47.0455 211.93 2770.48 2707 189.526 2912.34 2910 59.395 0.104162 0
5 163.32 2482.12 2478 42.2112 2518.73 2519 48.6491 292.016 2937.08 2940 61.9115 2928.85 2927 52.9306 0.252368 0
6 189.372 2494.12 2470.5 74.9615 2499.55 2502 54.6236 232.481 2796.85 2776 174.013 2902.09 2903 54.5808 0.0890725 0
7 168.026 2446.43 2457 37.8618 2477.15 2476 48.131 286.551 2877.89 2866.5 62.5231 2880.52 2876 57.8547 0.231827 0
8 1427.73 4493.25 4494.5 230.766 2473.76 2476 54.1906 1586.39 4710.38 4689.5 287.128 2879.21 2883 61.8258 0.0457642 0.152025382
9 245.054 2519.04 2525 34.7608 2449.53 2459 48.5287 259.285 2778.04 2770 82.0817 2842.24 2838 59.9504 0.0245151 0.081437399
10 292.075 2575.69 2576 60.3541 2443.83 2446 48.1565 242.286 2722.5 2728.5 82.1522 2823.27 2818 54.1195 -0.0811662 -0.26962828
11 152.167 2368.25 2370 54.7264 2422.76 2426 46.2272 168.531 2583.33 2563 83.1419 2806.53 2802.5 59.5958 0.0443579 0.147353754
12 9024.97 16589.9 16394 1566.67 2427.41 2429 53.4757 8796.74 15340.7 15171 1728.05 2779.12 2788 75.6093 -0.0111236 -0.036951799
13 222.415 2429.91 2441 57.0438 2394.65 2396 57.769 201.432 2569.78 2558 63.8492 2735.6 2735 66.7758 -0.043035 -0.142959176
14 163.87 2360.16 2350 90.5624 2397.97 2399 44.762 231.586 2622.44 2558 174.34 2726.9 2729 57.0481 0.150212 0.498993463
15 1351.08 4302.92 4238 285.88 2413.44 2413.5 47.1509 1324.18 4171.75 4110.5 232.014 2726.98 2722.5 58.2083 -0.00873404 -0.029013853
16 212.548 2428.83 2431.5 51.0768 2404.38 2410 42.8332 233.185 2605.33 2577.5 116.668 2711.79 2710 51.2372 0.0402434 0.133685681
17 201.202 2409.76 2412 40.3012 2389.43 2390.5 52.9612 401.515 2789.92 2802 62.6032 2601.04 2643.5 135.511 0.300071 0.996814285
18 182.791 2376.08 2376.5 47.9065 2389.31 2388 53.3683 247.826 2579.81 2560.5 113.961 2655.84 2666 87.0353 0.132191 0.439128997
19 210.337 2398.31 2388 51.7616 2375.97 2382 56.2268 246.082 2600.38 2596 84.1941 2683.05 2684 64.3994 0.0681651 0.226439561
20 271.343 2499.78 2505 56.8522 2391.91 2393 43.1396 279.245 2650.57 2660 41.5811 2685.19 2679 59.8513 0.0124669 0.041414145

Total number of rows: 16281

Table truncated, full table size 2034 Kbytes.




Supplementary data files not provided

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