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Sample GSM4645153 Query DataSets for GSM4645153
Status Public on Aug 20, 2020
Title E16_5_HSC_Liver
Sample type SRA
 
Source name Hematopoietic stem cell
Organism Mus musculus
Characteristics strain background: B6
age: E16.5
cell type: Hematopoietic stem cell
Treatment protocol N/A
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol 10x Genomcis Chromium single cell preparation
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
 
Data processing Generation of fastq files via https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest
Alignment to mm10 genome build via https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest
Genome_build: mm10
Supplementary_files_format_and_content: barcodes.tsv, genes.tsv, matrix.mtx
 
Submission date Jun 29, 2020
Last update date Aug 20, 2020
Contact name Jeffery Magee
E-mail(s) magee_j@kids.wustl.edu
Organization name Washington University School of Medicine
Department Internal Medicine - Cardiovascular Division
Street address 660 S Euclid Ave.
City St Louis
State/province Missouri
ZIP/Postal code 63110
Country USA
 
Platform ID GPL21493
Series (2)
GSE128761 Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution (scRNA-seq)
GSE128762 Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution
Relations
BioSample SAMN15399446
SRA SRX8632985

Supplementary file Size Download File type/resource
GSM4645153_E16_5_HSC_Liver_barcodes.tsv.gz 20.4 Kb (ftp)(http) TSV
GSM4645153_E16_5_HSC_Liver_features.tsv.gz 272.8 Kb (ftp)(http) TSV
GSM4645153_E16_5_HSC_Liver_matrix.mtx.gz 60.1 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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