NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM4676436 Query DataSets for GSM4676436
Status Public on Mar 11, 2021
Title J01127-L1_S11_L003_R1_001
Sample type SRA
 
Source name hemorrhoid tissue/anal canal
Organism Homo sapiens
Characteristics gender: male
bmi: 36.2959222320414
condition: controls
tissue: hemorrhoid tissue/anal canal
histological zone: transition zone
Extracted molecule total RNA
Extraction protocol mirVana miRNA Isolation Kit (Ambion).
NEXTFLEX Combo-Seq Kit (Perkin Elmer).
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 4000
 
Data processing docker run -v ~/excerpt/input:/exceRptInput \ -v ~/excerpt/results:/exceRptOutput \ -v ~/excerpt/hg38:/exceRpt_DB/hg38 \ -t rkitchen/excerpt \ ADAPTER_SEQ=AAAAAAAAAA \ MIN_READ_LENGTH=15 \ STAR_outFilterMatchNmin=15 \ RANDOM_BARCODE_LENGTH=4 \ RANDOM_BARCODE_LOCATION='-5p'
Genome_build: hg38
Supplementary_files_format_and_content: raw count and rpm
 
Submission date Jul 17, 2020
Last update date Mar 12, 2021
Contact name Simonas Juzenas
E-mail(s) sjuzenas@ikmb.uni-kiel.de
Organization name Christian-Albrechts-University of Kiel
Department Institute of Clinical Molecular Biology
Lab Genetics & Bioinformatics
Street address Am Botanischen Garten 11
City Kiel
ZIP/Postal code 24118
Country Germany
 
Platform ID GPL20301
Series (1)
GSE154650 Transcriptome Analysis of Human Hemorrhoids Tissue
Relations
BioSample SAMN15569092
SRA SRX8756203

Supplementary file Size Download File type/resource
GSM4676436_J01127-L1_S11_L003_R1_001.tsv.gz 4.5 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap