|
| Status |
Public on Mar 11, 2021 |
| Title |
J01129-L1_S28_L006_R1_001 |
| Sample type |
SRA |
| |
|
| Source name |
hemorrhoid tissue/anal canal
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
bmi: 26.171875
condition: controls
tissue: hemorrhoid tissue/anal canal
histological zone: anoderm region
|
| Extracted molecule |
total RNA |
| Extraction protocol |
mirVana miRNA Isolation Kit (Ambion).
NEXTFLEX Combo-Seq Kit (Perkin Elmer).
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Data processing |
docker run -v ~/excerpt/input:/exceRptInput \ -v ~/excerpt/results:/exceRptOutput \ -v ~/excerpt/hg38:/exceRpt_DB/hg38 \ -t rkitchen/excerpt \ ADAPTER_SEQ=AAAAAAAAAA \ MIN_READ_LENGTH=15 \ STAR_outFilterMatchNmin=15 \ RANDOM_BARCODE_LENGTH=4 \ RANDOM_BARCODE_LOCATION='-5p'
Genome_build: hg38
Supplementary_files_format_and_content: raw count and rpm
|
| |
|
| Submission date |
Jul 17, 2020 |
| Last update date |
Mar 12, 2021 |
| Contact name |
Simonas Juzenas |
| E-mail(s) |
sjuzenas@ikmb.uni-kiel.de
|
| Organization name |
Christian-Albrechts-University of Kiel
|
| Department |
Institute of Clinical Molecular Biology
|
| Lab |
Genetics & Bioinformatics
|
| Street address |
Am Botanischen Garten 11
|
| City |
Kiel |
| ZIP/Postal code |
24118 |
| Country |
Germany |
| |
|
| Platform ID |
GPL20301 |
| Series (1) |
| GSE154650 |
Transcriptome Analysis of Human Hemorrhoids Tissue |
|
| Relations |
| BioSample |
SAMN15569090 |
| SRA |
SRX8756205 |
