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Sample GSM4676441 Query DataSets for GSM4676441
Status Public on Mar 11, 2021
Title J01132-L1_S16_L004_R1_001
Sample type SRA
 
Source name hemorrhoid tissue/anal canal
Organism Homo sapiens
Characteristics gender: female
bmi: 30.1162131519274
condition: controls
tissue: hemorrhoid tissue/anal canal
histological zone: anoderm region
Extracted molecule total RNA
Extraction protocol mirVana miRNA Isolation Kit (Ambion).
NEXTFLEX Combo-Seq Kit (Perkin Elmer).
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 4000
 
Data processing docker run -v ~/excerpt/input:/exceRptInput \ -v ~/excerpt/results:/exceRptOutput \ -v ~/excerpt/hg38:/exceRpt_DB/hg38 \ -t rkitchen/excerpt \ ADAPTER_SEQ=AAAAAAAAAA \ MIN_READ_LENGTH=15 \ STAR_outFilterMatchNmin=15 \ RANDOM_BARCODE_LENGTH=4 \ RANDOM_BARCODE_LOCATION='-5p'
Genome_build: hg38
Supplementary_files_format_and_content: raw count and rpm
 
Submission date Jul 17, 2020
Last update date Mar 12, 2021
Contact name Simonas Juzenas
E-mail(s) sjuzenas@ikmb.uni-kiel.de
Organization name Christian-Albrechts-University of Kiel
Department Institute of Clinical Molecular Biology
Lab Genetics & Bioinformatics
Street address Am Botanischen Garten 11
City Kiel
ZIP/Postal code 24118
Country Germany
 
Platform ID GPL20301
Series (1)
GSE154650 Transcriptome Analysis of Human Hemorrhoids Tissue
Relations
BioSample SAMN15569087
SRA SRX8756208

Supplementary file Size Download File type/resource
GSM4676441_J01132-L1_S16_L004_R1_001.tsv.gz 4.0 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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