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Sample GSM4693397 Query DataSets for GSM4693397
Status Public on Sep 30, 2020
Title M14_S4
Sample type SRA
 
Source name Transcriptome of single cells
Organisms Homo sapiens; Mus musculus
Characteristics genome build: hg19_mm10
sample type: Cell Line
condition: HEK293 and NIH/3T3
Extracted molecule polyA RNA
Extraction protocol Seq-Well, 10x Chrominum V3, Smart-Seq2
Illumina Nextera XT
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Data processing Illumina bcl2fastq2.17.1.14 was used to generate fastqs from bcl files
STAR was used to align the scRNA-seq data
Regression analysis was done as described in manuscript
Genome_build: hg19; mm10; hg19_mm10
Supplementary_files_format_and_content: human or mouse UMI-collapsed transcripts, gene counts
 
Submission date Jul 23, 2020
Last update date Oct 01, 2020
Contact name Ken Dower
E-mail(s) Ken.Dower@pfizer.com
Organization name Pfizer
Department Inflammation & Immunology
Street address 1 Portland Street
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL19415
Series (1)
GSE150672 Highly Efficient, Massively-Parallel Single-Cell RNA-Seq Reveals Cellular States and Molecular Features of Human Skin Pathology
Relations
BioSample SAMN15636377
SRA SRX8816036

Supplementary file Size Download File type/resource
GSM4693397_reads.M14_S4_R1.fastq.HUMAN.umi.dge.txt.gz 292.2 Kb (ftp)(http) TXT
GSM4693397_reads.M14_S4_R1.fastq.MOUSE.umi.dge.txt.gz 403.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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