|
| Status |
Public on Feb 08, 2023 |
| Title |
WT1_RNA |
| Sample type |
SRA |
| |
|
| Source name |
CD133 Purifed bone marrow cells
|
| Organism |
Mus musculus |
| Characteristics |
cell type: CD133 Purifed bone marrow cells
strain: C57BL6/J
genotype: Asxl1 wild type
timepoint: 6 months
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Libraries were prepared using a TruSeq library prep kit (Illumina)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
NextSeq 550 |
| |
|
| Description |
Bulk RNA Seq
Bulk_ASXL_counts.filt.txt
|
| Data processing |
Sequencing from Bulk RNA seq was aligned using STAR
Differential Expression was determined using Deseq2
|
| |
|
| Submission date |
Sep 18, 2020 |
| Last update date |
Feb 08, 2023 |
| Contact name |
Theresa A Lusardi |
| E-mail(s) |
lusardi@ohsu.edu
|
| Phone |
503-313-0219
|
| Organization name |
OHSU
|
| Department |
Knight Cancer Institute
|
| Lab |
CEDAR
|
| Street address |
2720 SW Moody Avenue
|
| City |
Portland |
| State/province |
Oregon |
| ZIP/Postal code |
97201 |
| Country |
USA |
| |
|
| Platform ID |
GPL21626 |
| Series (1) |
| GSE158184 |
ASXL1 Directs Neutrophilic Differentiation via Modulation of MYC and RNA Polymerase II |
|
| Relations |
| BioSample |
SAMN16205686 |
| SRA |
SRX9148648 |
