|
| Status |
Public on Jul 06, 2022 |
| Title |
OVM2 (miRNA-seq) |
| Sample type |
SRA |
| |
|
| Source name |
orbital venous malformation
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: vascular tissues
diagnosis: orbital venous malformation
|
| Treatment protocol |
None
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Small RNA Sample Prep kit (Illumina) was employed to construct libraries according to the manufacturer’s instructions. Library quality control was validated by Agilent 2100 Bioanalyzer (Agilent Technologies) and sequencing was conducted on Hiseq X Ten.
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
HiSeq X Ten |
| |
|
| Data processing |
We generated bw files using Deeptools, which can convert Bam file to bw files.
Genome_build: Hg38
Supplementary_files_format_and_content: bw
|
| |
|
| Submission date |
Sep 30, 2020 |
| Last update date |
Jul 06, 2022 |
| Contact name |
Jie Yu |
| E-mail(s) |
yujiesjtu@sjtu.edu.cn
|
| Phone |
+86 18868180591
|
| Organization name |
Shanghai Key Laboratory of Orbital Diseases and Ocular Oncology
|
| Department |
Department of Ophthalmology
|
| Street address |
No. 639, Zhizaoju road, Huangpu district
|
| City |
Shanghai |
| ZIP/Postal code |
200011 |
| Country |
China |
| |
|
| Platform ID |
GPL20795 |
| Series (2) |
| GSE158793 |
Circular RNA expression analysis of orbital venous malformation [miRNA-Seq] |
| GSE158798 |
Circular RNA expression analysis of orbital venous malformation |
|
| Relations |
| BioSample |
SAMN16302771 |
| SRA |
SRX9218970 |
