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Sample GSM4819846 Query DataSets for GSM4819846
Status Public on Jun 12, 2022
Title NKD180900306
Sample type SRA
 
Source name tumour
Organism Mus musculus
Characteristics tissue: tumour
age: 8-9 weeks
gender: f
group: NR
tumour type: Renca
strain: balb/c
timepoint: d0
Treatment protocol MIce were treated 1 hour AFTER sample collected: 100ug anti-CTLA4 + anti-PDL1 i.p.
Growth protocol Subcutaneous tumour
Extracted molecule polyA RNA
Extraction protocol gentleMACS system (Miltenyi Biotec)
Chromium Single Cell 3′ Libraries
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Data processing cellranger: --expect-cells 60000
Supplementary_files_format_and_content: cellranger3 output - cellranger3 filtered matrices, containing cell barcodes, genes (feature), and count matrices in mtx format
 
Submission date Oct 06, 2020
Last update date Jun 12, 2022
Contact name Wee Loong Chin
Organization name National Centre For Asbestos Related Diseases
Street address Level 5, Qq Block, Qeii Medical Centre 6 Verdun St, Nedlands
City Perth
ZIP/Postal code 6009
Country Australia
 
Platform ID GPL13112
Series (2)
GSE153942 Dynamic IFNβ signalling underlies treatment response to immune checkpoint therapy in cancer [single-cell RNA-seq]
GSE153943 Dynamic IFNβ signalling underlies treatment response to immune checkpoint therapy in cancer
Relations
BioSample SAMN15420754
SRA SRX8725074

Supplementary file Size Download File type/resource
GSM4819846_NKD180900306.tar.gz 13.1 Mb (ftp)(http) TAR
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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