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Sample GSM4837588 Query DataSets for GSM4837588
Status Public on Oct 21, 2020
Title p3
Sample type genomic
 
Source name hybrid between MDA231-MB-231 and SUM159PT, passage 3 bulk
Organism Homo sapiens
Characteristics cell line: hybrid between MDA231-MB-231 and SUM159PT
cell type: cell line
sample group: G9
Growth protocol Cell were grown in the corresponding media in standard conditions
Extracted molecule genomic DNA
Extraction protocol Quiagen DNAeasy
Label C-Bio and A-DNP
Label protocol As per manufacturer (Illumina)
 
Hybridization protocol As per manufacturer (Illumina)
Scan protocol As per manufacturer (Illumina)
Data processing Genome Studio 2.0 ( Illumina), cnvPartition 3.2.0 plugin
 
Submission date Oct 20, 2020
Last update date Oct 21, 2020
Contact name Daria Miroshnychenko
E-mail(s) daria.miroshnychenko@moffitt.org
Organization name Moffitt Cancer Center
Department Cancer Physiology
Lab Marusyk Lab
Street address 12902 USF Magnolia Drive
City TAMPA
State/province FL
ZIP/Postal code 33612
Country USA
 
Platform ID GPL29257
Series (2)
GSE159679 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations. [1]
GSE159681 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations

Data table header descriptions
ID_REF
VALUE Genotype Call (SNP call): AA, AB, BB, NC
p3.Score
p3.Theta
p3.R
p3.B Allele Freq
p3.Log R Ratio
p3.CNV Value
p3.CNV Confidence

Data table
ID_REF VALUE p3.Score p3.Theta p3.R p3.B Allele Freq p3.Log R Ratio p3.CNV Value p3.CNV Confidence
rs1000002 AA 0.4676495 0.2401672 0.9312352 0 -0.02116335 2
rs1000003 AA 0.2351214 0.2028854 1.253648 0.01486955 -0.08003341 2
rs10000030 BB 0.1906378 0.6983357 0.5421587 0.9922773 -0.01485929 2
rs10000037 BB 0.4199027 0.9383978 0.8342404 1 -0.07121202 2
rs10000041 AA 0.430068 0.2602632 1.396439 0.06393695 -0.07145804 2
rs1000007 AA 0.396179 0.2912241 1.140392 0.07315912 -0.0579518 2
rs1000016 AA 0.2035265 0.247888 0.7546003 0 0.08158128 2
rs10000180 AB 0.4234854 0.6162609 0.6291106 0.5548074 -0.06197703 2
rs10000272 AA 0.5249108 0.01055309 1.050826 0.000968737 -0.0232603 2
rs1000031 AB 0.3496598 0.2745627 1.298833 0.4111007 0.01186875 2
rs10000432 AA 0.4817017 0.05614019 0.3583653 0 -0.02800563 2
rs10000438 AA 0.5001162 0.03246273 0.6481667 0.001059197 0.01612902 2
rs1000047 AB 0.5947514 0.5764866 0.7540342 0.4908974 0.01118272 2
rs10000471 AA 0.1998202 0.2524543 0.6479921 0 0.03331864 2
rs1000068 BB 0.5147853 0.9900982 1.028841 1 -0.009831273 2
rs10000708 AB 0.4304765 0.3938794 1.63456 0.5110256 0.02261452 2
rs10000852 AB 0.2796703 0.6765809 1.299145 0.5046995 0.08026323 2
rs1000087 AB 0.3419139 0.4075065 0.7803309 0.5264132 -0.01079271 2
rs1000094 AA 0.4668699 0.2146327 1.139853 0.04209664 -0.1096615 2
rs10000976 BB 0.5336784 0.8397675 0.8717417 0.9667614 0.02321831 2

Total number of rows: 293869

Table truncated, full table size 18664 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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