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Sample GSM4837591 Query DataSets for GSM4837591
Status Public on Oct 21, 2020
Title MDA231
Sample type genomic
 
Source name MDA-MB-231
Organism Homo sapiens
Characteristics cell line: MDA-MB-231
cell type: cell line
sample group: G12
Growth protocol Cell were grown in the corresponding media in standard conditions
Extracted molecule genomic DNA
Extraction protocol Quiagen DNAeasy
Label C-Bio and A-DNP
Label protocol As per manufacturer (Illumina)
 
Hybridization protocol As per manufacturer (Illumina)
Scan protocol As per manufacturer (Illumina)
Data processing Genome Studio 2.0 ( Illumina), cnvPartition 3.2.0 plugin
 
Submission date Oct 20, 2020
Last update date Oct 21, 2020
Contact name Daria Miroshnychenko
E-mail(s) daria.miroshnychenko@moffitt.org
Organization name Moffitt Cancer Center
Department Cancer Physiology
Lab Marusyk Lab
Street address 12902 USF Magnolia Drive
City TAMPA
State/province FL
ZIP/Postal code 33612
Country USA
 
Platform ID GPL29257
Series (2)
GSE159679 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations. [1]
GSE159681 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations

Data table header descriptions
ID_REF
VALUE Genotype Call (SNP call): AA, AB, BB, NC
MDA231.Score
MDA231.Theta
MDA231.R
MDA231.B Allele Freq
MDA231.Log R Ratio
MDA231.CNV Value
MDA231.CNV Confidence

Data table
ID_REF VALUE MDA231.Score MDA231.Theta MDA231.R MDA231.B Allele Freq MDA231.Log R Ratio MDA231.CNV Value MDA231.CNV Confidence
rs1000002 AB 0.4676495 0.5489423 0.9584451 0.5 0 3 816.7393
rs1000003 AA 0.2350152 0.2878208 1.350355 0.1225708 -0.04518823 2
rs10000030 NC 0.0625187 0.5153574 0.5188053 0.7255617 -0.1702795 3 2999.589
rs10000037 BB 0.4199027 0.929457 0.8692216 0.9906479 -0.0183026 3 594.0399
rs10000041 AA 0.430068 0.04707005 1.394265 0 -0.07499718 3 2999.589
rs1000007 AA 0.396179 0.02089406 0.9893651 0 -0.3053049 2
rs1000016 NC 0.06023295 0.4978137 0.7186956 0.2807254 -0.2071401 2
rs10000180 NC 0.01943581 0.308706 0.6563499 0.2571571 0.1091771 3 2999.589
rs10000272 AA 0.5249108 0.009937764 1.097686 0.000331507 0.04010407 3 329.7246
rs1000031 AA 0.3496598 0.01911327 1.102643 0 0.06416959 2
rs10000432 AA 0.4817017 0.06210454 0.4118799 0.004620778 0.1694576 3 594.0399
rs10000438 AA 0.5001162 0.02391573 0.688804 0 0.1092157 3 2999.589
rs1000047 BB 0.5947514 0.9639412 0.6848605 1 0 2 740.5295
rs10000471 AA 0.1998202 0.03859607 0.7011629 0 0.3588071 3 2999.589
rs1000068 BB 0.5147853 0.9761028 1.1094 0.9953144 0.08771517 2 869.4482
rs10000708 AA 0.4304765 0.05132649 1.465153 0 0 3 594.0399
rs10000852 AB 0.2796703 0.6699078 1.252027 0.497063 0.02580633 3 2999.589
rs1000087 AB 0.3419139 0.3035891 0.764523 0.3984213 0.05066358 2
rs1000094 AA 0.4668699 0.03024974 1.175488 0 -0.06137258 2
rs10000976 BB 0.5336784 0.9700649 0.8360611 1 0.01264261 3 2999.589

Total number of rows: 293869

Table truncated, full table size 18911 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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