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Sample GSM4837592 Query DataSets for GSM4837592
Status Public on Oct 21, 2020
Title SUM1
Sample type genomic
 
Source name SUM159PT, replicate 1
Organism Homo sapiens
Characteristics cell line: SUM159PT
cell type: cell line
sample group: G1
Growth protocol Cell were grown in the corresponding media in standard conditions
Extracted molecule genomic DNA
Extraction protocol Quiagen DNAeasy
Label C-Bio and A-DNP
Label protocol As per manufacturer (Illumina)
 
Hybridization protocol As per manufacturer (Illumina)
Scan protocol As per manufacturer (Illumina)
Data processing Genome Studio 2.0 ( Illumina), cnvPartition 3.2.0 plugin
 
Submission date Oct 20, 2020
Last update date Oct 21, 2020
Contact name Daria Miroshnychenko
E-mail(s) daria.miroshnychenko@moffitt.org
Organization name Moffitt Cancer Center
Department Cancer Physiology
Lab Marusyk Lab
Street address 12902 USF Magnolia Drive
City TAMPA
State/province FL
ZIP/Postal code 33612
Country USA
 
Platform ID GPL29257
Series (2)
GSE159680 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations. [2]
GSE159681 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations

Data table header descriptions
ID_REF
VALUE Genotype Call (SNP call): AA, AB, BB, NC
SUM1.Theta
SUM1.R
SUM1.B Allele Freq
SUM1.Log R Ratio
SUM1.GType
SUM1.CNV Value

Data table
ID_REF VALUE SUM1.Theta SUM1.R SUM1.B Allele Freq SUM1.Log R Ratio SUM1.GType SUM1.CNV Value
rs9786882 0.121296 0.4577302 0.160833 0.5765122 0.757897 NC 4
rs9786873 0.1441199 0.5459653 0.05287375 0.5458122 0.1877098 NC 4
rs9786778 0.1386177 0.2878383 0.08164303 0.1838395 1.017141 NC 4
rs9786467 0.1076024 0.722538 0.08193575 0.7228793 -0.1273467 NC 4
rs9786452 0.06638367 0.4754469 0.04179155 0.4795495 -0.2389487 NC 4
rs9786352 0.04568329 0.5138667 0.03249819 0.5173327 -0.4175988 NC 4
rs9786130 0.409071 0.4834965 0.11627 0.475899 0.5655662 AB 4
rs9785755 0.2010094 0.591549 0.06395594 0.5900897 0.4859947 AB 4
rs9699410 0.3954454 0.4847737 0.08819016 0.4797488 0.09082057 AB 4
rs7893052 0.2361658 0.4875189 0.06870903 0.4863502 0.5796846 AB 4
rs4304517 0.3985122 0.7983397 0.1799287 0.8909897 -0.3994642 BB 4
rs35828002 NULL NULL NULL NULL NULL NC 4
rs34703625 0.1737774 0.6026518 0.09614441 0.7969417 0.7282716 BB 4
rs28840979 0.2838576 0.3235442 0.09986171 0.3172547 0.6575353 AB 4
rs28811909 0.4301915 0.4890355 0.1348596 0.490382 0.7267268 AB 4
rs2724844 0.3141418 0.4877898 0.08169109 0.4913459 0.3961893 AB 4
rs2032597 0.3835559 0.5376531 0.08281352 0.5375578 0.6704605 AB 4
rs2032596 0.09123991 0.4375882 0.04654077 0.4259092 -0.2647904 NC 4
rs2032595 0.05784803 0.7152858 0.3144548 0.7171072 0.06181235 NC 4
rs2032594 0.2578374 0.4584215 0.07222332 0.4597794 0.6697471 AB 4

Total number of rows: 294602

Table truncated, full table size 18165 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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