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Sample GSM4837593 Query DataSets for GSM4837593
Status Public on Oct 21, 2020
Title SUM2
Sample type genomic
 
Source name SUM159PT, replicate 2
Organism Homo sapiens
Characteristics cell line: SUM159PT
cell type: cell line
sample group: G2
Growth protocol Cell were grown in the corresponding media in standard conditions
Extracted molecule genomic DNA
Extraction protocol Quiagen DNAeasy
Label C-Bio and A-DNP
Label protocol As per manufacturer (Illumina)
 
Hybridization protocol As per manufacturer (Illumina)
Scan protocol As per manufacturer (Illumina)
Data processing Genome Studio 2.0 ( Illumina), cnvPartition 3.2.0 plugin
 
Submission date Oct 20, 2020
Last update date Oct 21, 2020
Contact name Daria Miroshnychenko
E-mail(s) daria.miroshnychenko@moffitt.org
Organization name Moffitt Cancer Center
Department Cancer Physiology
Lab Marusyk Lab
Street address 12902 USF Magnolia Drive
City TAMPA
State/province FL
ZIP/Postal code 33612
Country USA
 
Platform ID GPL29257
Series (2)
GSE159680 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations. [2]
GSE159681 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations

Data table header descriptions
ID_REF
VALUE Genotype Call (SNP call): AA, AB, BB, NC
SUM2.Theta
SUM2.R
SUM2.B Allele Freq
SUM2.Log R Ratio
SUM2.GType
SUM2.CNV Value

Data table
ID_REF VALUE SUM2.Theta SUM2.R SUM2.B Allele Freq SUM2.Log R Ratio SUM2.GType SUM2.CNV Value
rs9786882 0.121296 0.5983918 0.1160633 0.9163067 0.002104049 NC 2
rs9786873 0.2034909 0.5258524 0.05991548 0.5246407 0.3936687 AB 3
rs9786778 0.08506652 0.1894021 0.05373148 0 0.489948 NC 2
rs9786467 0.03928732 0.7723919 0.09932616 0.7753571 0.1114345 NC 2
rs9786452 0.0284099 0.5414657 0.02235999 0.5490429 -1.199332 NC 3
rs9786352 0.1042602 0.5017799 0.04995947 0.5046096 0.2188887 NC 2
rs9786130 0.1370034 0.7100371 0.0746409 0.7143629 -0.2497074 NC 3
rs9785755 0.07191106 0.4428989 0.04196461 0.4336159 -0.00662422 NC 3
rs9699410 0.1691798 0.6878588 0.06647065 0.6935226 -0.4706583 AB 2
rs7893052 0.005041056 0.8576314 0.03832071 0.8759422 -0.6629214 NC 3
rs4304517 0.3985122 0.8747185 0.2283329 0.9786857 -0.06469446 BB 3
rs35828002 NULL NULL NULL NULL NULL NC 3
rs34703625 0.062671 0.5518426 0.06681322 0.7275903 0.2580285 NC 2
rs28840979 0.2626112 0.4316246 0.07129064 0.4310236 0.1571754 AB 3
rs28811909 0.3955311 0.4317899 0.0866199 0.4301234 0.09763385 AB 3
rs2724844 0.2793747 0.5571643 0.07588775 0.5643717 0.2251296 AB 2
rs2032597 0.2489046 0.5718242 0.06620428 0.5735273 0.3076894 AB 3
rs2032596 0.2089412 0.5849106 0.06449825 0.5809854 0.1133398 AB 3
rs2032595 0.1294147 0.6855939 0.3754659 0.6858525 0.3199054 NC 3
rs2032594 0.141227 0.4576955 0.05564628 0.4590151 0.2936214 NC 3

Total number of rows: 294602

Table truncated, full table size 18121 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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