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Sample GSM4837596 Query DataSets for GSM4837596
Status Public on Oct 21, 2020
Title SM1
Sample type genomic
 
Source name hybrid between SUM159PT and MDA-MB-231, subclone 1
Organism Homo sapiens
Characteristics cell line: hybrid between SUM159PT and MDA-MB-231
cell type: cell line
sample group: G5
Growth protocol Cell were grown in the corresponding media in standard conditions
Extracted molecule genomic DNA
Extraction protocol Quiagen DNAeasy
Label C-Bio and A-DNP
Label protocol As per manufacturer (Illumina)
 
Hybridization protocol As per manufacturer (Illumina)
Scan protocol As per manufacturer (Illumina)
Data processing Genome Studio 2.0 ( Illumina), cnvPartition 3.2.0 plugin
 
Submission date Oct 20, 2020
Last update date Oct 21, 2020
Contact name Daria Miroshnychenko
E-mail(s) daria.miroshnychenko@moffitt.org
Organization name Moffitt Cancer Center
Department Cancer Physiology
Lab Marusyk Lab
Street address 12902 USF Magnolia Drive
City TAMPA
State/province FL
ZIP/Postal code 33612
Country USA
 
Platform ID GPL29257
Series (2)
GSE159680 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations. [2]
GSE159681 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations

Data table header descriptions
ID_REF
VALUE Genotype Call (SNP call): AA, AB, BB, NC
SM1.Theta
SM1.R
SM1.B Allele Freq
SM1.Log R Ratio
SM1.GType
SM1.CNV Value

Data table
ID_REF VALUE SM1.Theta SM1.R SM1.B Allele Freq SM1.Log R Ratio SM1.GType SM1.CNV Value
rs9786882 0.121296 0.7043585 0.125342 1 -0.06976212 NC 2
rs9786873 0.07694551 0.4017747 0.04138433 0.3940326 -0.1026476 NC 2
rs9786778 0.06155715 0.1425435 0.04556075 0 0.2897972 NC 2
rs9786467 0.1953507 0.6930732 0.08624238 0.6918638 -0.02994933 AB 2
rs9786452 0.1984169 0.3737087 0.06767714 0.3724566 0.4654242 AB 2
rs9786352 0.05552113 0.6153622 0.03688427 0.6241699 -0.3634087 NC 2
rs9786130 0.2150312 0.6024675 0.06399177 0.6011317 -0.383426 AB 2
rs9785755 0.03543525 0.7818835 0.04525405 0.7904418 -0.233619 NC 2
rs9699410 0.2428014 0.4953001 0.06661177 0.4908292 -0.315808 AB 2
rs7893052 0.2142472 0.3609388 0.06597237 0.3531079 0.530688 AB 2
rs4304517 0.3985122 0.9424815 0.2055895 1 -0.2239554 BB 2
rs35828002 NULL NULL NULL NULL NULL NC 2
rs34703625 0.13603 0.915113 0.06507163 1 -0.1327631 NC 2
rs28840979 0.1890542 0.5300874 0.06163884 0.5346686 -0.09507363 AB 2
rs28811909 0.3735702 0.3497177 0.1129299 0.3437316 0.4941595 AB 2
rs2724844 0.2812456 0.4935348 0.07617734 0.4973933 0.2946602 AB 2
rs2032597 0.09035902 0.4090895 0.04503584 0.4022276 -0.157068 NC 2
rs2032596 0.03041343 0.7632912 0.0395427 0.7687545 -0.7722406 NC 2
rs2032595 0.3410754 0.6280932 0.331217 0.6253254 0.1433946 AB 2
rs2032594 0.0986745 0.5191356 0.04846419 0.5236889 0.06248462 NC 2

Total number of rows: 294602

Table truncated, full table size 18089 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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