NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM4837597 Query DataSets for GSM4837597
Status Public on Oct 21, 2020
Title SM2
Sample type genomic
 
Source name hybrid between SUM159PT and MDA-MB-231, subclone 2
Organism Homo sapiens
Characteristics cell line: hybrid between SUM159PT and MDA-MB-231
cell type: cell line
sample group: G6
Growth protocol Cell were grown in the corresponding media in standard conditions
Extracted molecule genomic DNA
Extraction protocol Quiagen DNAeasy
Label C-Bio and A-DNP
Label protocol As per manufacturer (Illumina)
 
Hybridization protocol As per manufacturer (Illumina)
Scan protocol As per manufacturer (Illumina)
Data processing Genome Studio 2.0 ( Illumina), cnvPartition 3.2.0 plugin
 
Submission date Oct 20, 2020
Last update date Oct 21, 2020
Contact name Daria Miroshnychenko
E-mail(s) daria.miroshnychenko@moffitt.org
Organization name Moffitt Cancer Center
Department Cancer Physiology
Lab Marusyk Lab
Street address 12902 USF Magnolia Drive
City TAMPA
State/province FL
ZIP/Postal code 33612
Country USA
 
Platform ID GPL29257
Series (2)
GSE159680 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations. [2]
GSE159681 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations

Data table header descriptions
ID_REF
VALUE Genotype Call (SNP call): AA, AB, BB, NC
SM2.Theta
SM2.R
SM2.B Allele Freq
SM2.Log R Ratio
SM2.GType
SM2.CNV Value

Data table
ID_REF VALUE SM2.Theta SM2.R SM2.B Allele Freq SM2.Log R Ratio SM2.GType SM2.CNV Value
rs9786882 0.1067552 0.6991864 0.07894682 1 -0.7282737 NC 2
rs9786873 0.4261962 0.5524523 0.08587657 0.5526407 0.8792676 AB 2
rs9786778 0.02470473 0 0.02199417 0 -0.6393076 NC 3
rs9786467 0.2545834 0.5246007 0.07174639 0.5145243 -0.1532257 AB 3
rs9786452 0.05013871 0.3045281 0.03897257 0.2996349 -0.3246915 NC 2
rs9786352 0.1427439 0.4696135 0.05650389 0.4707503 0.4041341 NC 2
rs9786130 0.1905015 0.5728052 0.06090806 0.5699082 -0.4293306 AB 2
rs9785755 0.1049044 0.7106002 0.05543051 0.7154067 0.1377293 NC 2
rs9699410 0.250469 0.6721569 0.07544177 0.6769942 -0.2757689 AB 2
rs7893052 0.03666599 0.3615984 0.02719901 0.3538022 -0.7476699 NC 2
rs4304517 0.3985122 0.8149495 0.2214877 0.9100606 -0.1016124 BB 2
rs35828002 0.006524147 0 0.003136758 0 0.3041552 NC 2
rs34703625 0.1399249 0.8115583 0.06608534 1 -0.01839335 NC 2
rs28840979 0.1058826 0.4364174 0.04928206 0.4360687 -0.3760986 NC 2
rs28811909 0.3738966 0.5109416 0.0827927 0.513441 0.01020658 AB 2
rs2724844 0.1152321 0.289898 0.06848752 0.2830388 0.1666052 NC 2
rs2032597 0.1831179 0.4944574 0.05861147 0.4920886 0.2152564 AB 2
rs2032596 0.06962974 0.7489389 0.06546047 0.7536469 -0.03136695 NC 2
rs2032595 0.3570522 0.621298 0.3025566 0.6181726 0.01334295 AB 2
rs2032594 0.1146082 0.3566065 0.05205093 0.3526057 0.2047796 NC 2

Total number of rows: 294602

Table truncated, full table size 17972 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap