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Sample GSM4837601 Query DataSets for GSM4837601
Status Public on Oct 21, 2020
Title MS3
Sample type genomic
 
Source name hybrid between MDA-MB-231 and SUM159PT, subclone 3
Organism Homo sapiens
Characteristics cell line: hybrid between MDA-MB-231 and SUM159PT
cell type: cell line
sample group: G10
Growth protocol Cell were grown in the corresponding media in standard conditions
Extracted molecule genomic DNA
Extraction protocol Quiagen DNAeasy
Label C-Bio and A-DNP
Label protocol As per manufacturer (Illumina)
 
Hybridization protocol As per manufacturer (Illumina)
Scan protocol As per manufacturer (Illumina)
Data processing Genome Studio 2.0 ( Illumina), cnvPartition 3.2.0 plugin
 
Submission date Oct 20, 2020
Last update date Oct 21, 2020
Contact name Daria Miroshnychenko
E-mail(s) daria.miroshnychenko@moffitt.org
Organization name Moffitt Cancer Center
Department Cancer Physiology
Lab Marusyk Lab
Street address 12902 USF Magnolia Drive
City TAMPA
State/province FL
ZIP/Postal code 33612
Country USA
 
Platform ID GPL29257
Series (2)
GSE159680 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations. [2]
GSE159681 Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations

Data table header descriptions
ID_REF
VALUE Genotype Call (SNP call): AA, AB, BB, NC
MS3.Theta
MS3.R
MS3.B Allele Freq
MS3.Log R Ratio
MS3.GType
MS3.CNV Value

Data table
ID_REF VALUE MS3.Theta MS3.R MS3.B Allele Freq MS3.Log R Ratio MS3.GType MS3.CNV Value
rs9786882 0.121296 0.697638 0.1147054 1 -0.1867677 NC 2
rs9786873 0.02661876 0.5913414 0.01926814 0.5935766 -1.324725 NC 2
rs9786778 0.01739796 0.3633341 0.0207217 0.3372592 -1.016995 NC 2
rs9786467 0.3273326 0.6503536 0.09202246 0.6468957 0.09839599 AB 2
rs9786452 0.1125348 0.4144673 0.05283045 0.4153604 0.1045469 NC 2
rs9786352 0.08361389 0.5487595 0.04560337 0.5540619 0.02571916 NC 2
rs9786130 0.1911918 0.6907462 0.076301 0.6940566 -0.2025187 AB 2
rs9785755 0.04073748 0.5734029 0.02952163 0.5709885 -0.6064076 NC 2
rs9699410 0.4220458 0.4687904 0.09971881 0.4629243 0.2707878 AB 2
rs7893052 0.09746666 0.500875 0.04805274 0.5004092 0.0623186 NC 2
rs4304517 0.3985122 0.8859445 0.2551099 0.991575 0.09397569 BB 2
rs35828002 NULL NULL NULL NULL NULL NC 2
rs34703625 0.1338138 0.7026976 0.06449613 0.9334981 0.0500597 NC 2
rs28840979 0.2805078 0.443523 0.07370532 0.4435482 0.2036832 AB 2
rs28811909 0.1100436 0.5269929 0.04895709 0.5303371 -0.7616266 NC 2
rs2724844 0.1625174 0.3259149 0.06545424 0.3209513 0.09671371 AB 2
rs2032597 0.07429101 0.3778314 0.04131101 0.3693244 -0.2787539 NC 2
rs2032596 0.02938532 0.7808945 0.04687286 0.7872844 -0.5434797 NC 2
rs2032595 0.1589711 0.6773996 0.2859421 0.6772269 -0.07242764 AB 2
rs2032594 0.05531905 0.3490588 0.03728865 0.3446607 -0.2758447 NC 2

Total number of rows: 294602

Table truncated, full table size 18104 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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