|
| Status |
Public on Dec 03, 2020 |
| Title |
CNS tumor |
| Sample type |
genomic |
| |
|
| Source name |
Tumor tissue
|
| Organism |
Homo sapiens |
| Characteristics |
Sex: male
age (y): 1.5
tissue: brain
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
A was extracted according to MagPurix FFPE DNA Extraction Kit
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation850k Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using iScan Platform using standard recommended Illumina setting
|
| Description |
FFPE DNA
|
| Data processing |
Raw IDAT files were processed using R package ChAMP v.2.20
|
| |
|
| Submission date |
Dec 02, 2020 |
| Last update date |
Dec 03, 2020 |
| Contact name |
Sabina Barresi |
| E-mail(s) |
sabina.barresi@opbg.net
|
| Organization name |
Ospedale Pediatrico Bambino Gesu
|
| Street address |
Viale San Paolo 15
|
| City |
Rome |
| ZIP/Postal code |
00146 |
| Country |
Italy |
| |
|
| Platform ID |
GPL23976 |
| Series (1) |
| GSE162537 |
Expanding the spectrum of CNS EWSR1-PATZ1 rearranged tumors: an infantile case with leptomeningeal dissemination |
|
