NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM498451 Query DataSets for GSM498451
Status Public on Jul 24, 2012
Title UZHRCC007_RCC_clear_cell_BI_mRNA_rep2
Sample type RNA
 
Source name renal cell carcinoma ,clear cell RCC
Organism Homo sapiens
Characteristics grade: 2
stage: 2
sample type: neoplasia
icd-o 3 code: 8310/3
icd-o 3 diagnosis text: clear cell renal cell carcinoma
organ site: kidney
gender: NA
tissue type: renal cell carcinoma [clear cell RCC]
cluster id: B
Treatment protocol untreated tissue and cell line samples
Growth protocol untreated tissue and cell line samples
Extracted molecule total RNA
Extraction protocol All tumor tissues were selected according to the histologically verified presence of at least 80% tumor cells. RNA was extracted using the RNeasy minikit (Qiagen).
Label Biotin
Label protocol standard Affymetrix protocol; Broad institute
 
Hybridization protocol standard Affymetrix protocol; Broad institute
Scan protocol standard Affymetrix protocol; Broad institute
Description n/a
Data processing Affymetrix GeneChip data was normalized using MAS5 from Bioconductor
 
Submission date Jan 19, 2010
Last update date Jul 25, 2012
Contact name Michael Baudis
E-mail(s) mbaudis@gmail.com
Organization name University of Zurich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zurich
ZIP/Postal code 8057
Country Switzerland
 
Platform ID GPL3921
Series (1)
GSE19949 Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome

Data table header descriptions
ID_REF
VALUE MAS 5 signal
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 4194.95902613104 0.000265668291059673
1053_at 95.4548470581752 0.581930621987625
117_at 777.977446024971 0.00653199150688288
121_at 11552.3574245133 0.000265668291059673
1255_g_at 26.6391060859907 0.882839448441194
1294_at 5834.42867768965 0.000321571279513932
1316_at 350.38552873029 0.0668649772942342
1320_at 16.6231508490120 0.968664367582658
1405_i_at 3670.95534583432 0.000761703439073891
1431_at 388.554451857109 0.0193034606115381
1438_at 126.484497071830 0.541184237528375
1487_at 595.374368528079 0.00418036711173475
1494_f_at 326.885847263794 0.175989407541403
1598_g_at 4497.91998885642 0.000218931723439231
160020_at 501.959625965554 0.0351628139453115
1729_at 1001.31730716403 0.0351628139453115
1773_at 229.841652046066 0.0604193419667967
177_at 186.309166525336 0.418069378012375
179_at 779.900553922276 0.175989407541403
1861_at 287.555968792216 0.175989407541403

Total number of rows: 22277

Table truncated, full table size 1014 Kbytes.




Supplementary file Size Download File type/resource
GSM498451_UZHRCC007_HG-U133.CEL.gz 2.5 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap