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Sample GSM498452 Query DataSets for GSM498452
Status Public on Jul 24, 2012
Title UZHRCC008_RCC_clear_cell_BI_mRNA_rep3
Sample type RNA
Source name renal cell carcinoma ,clear cell RCC
Organism Homo sapiens
Characteristics grade: 2
stage: 2
sample type: neoplasia
icd-o 3 code: 8310/3
icd-o 3 diagnosis text: clear cell renal cell carcinoma
organ site: kidney
gender: NA
tissue type: renal cell carcinoma [clear cell RCC]
cluster id: A
Treatment protocol untreated tissue and cell line samples
Growth protocol untreated tissue and cell line samples
Extracted molecule total RNA
Extraction protocol All tumor tissues were selected according to the histologically verified presence of at least 80% tumor cells. RNA was extracted using the RNeasy minikit (Qiagen).
Label Biotin
Label protocol standard Affymetrix protocol; Broad institute
Hybridization protocol standard Affymetrix protocol; Broad institute
Scan protocol standard Affymetrix protocol; Broad institute
Description n/a
Data processing Affymetrix GeneChip data was normalized using MAS5 from Bioconductor
Submission date Jan 19, 2010
Last update date Jul 25, 2012
Contact name Michael Baudis
Organization name University of Zurich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zurich
ZIP/Postal code 8057
Country Switzerland
Platform ID GPL3921
Series (1)
GSE19949 Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome

Data table header descriptions
VALUE MAS 5 signal

Data table
1007_s_at 2727.50640488363 0.127645309087318
1053_at 445.073889177146 0.541184237528375
117_at 524.233998379886 0.732537440226834
121_at 2285.46248785832 0.0738301727035754
1255_g_at 198.165752439441 0.810312697808106
1294_at 845.743000594972 0.39799368200131
1316_at 872.915569979356 0.320830091341469
1320_at 190.632944302192 0.939580658033203
1405_i_at 827.67037796127 0.487479928082461
1431_at 440.568098282542 0.641309480335176
1438_at 434.190474897988 0.765443486711025
1487_at 266.027564242692 0.837064981130194
1494_f_at 1819.26422398137 0.175989407541403
1598_g_at 704.597705690868 0.781016771277121
160020_at 546.695005615855 0.520619670302202
1729_at 773.126115186037 0.320830091341469
1773_at 734.153032522394 0.458815762471625
177_at 400.270243338832 0.621815485272688
179_at 523.187794341436 0.749276323308829
1861_at 72.9454774648901 0.861234831712328

Total number of rows: 22277

Table truncated, full table size 997 Kbytes.

Supplementary file Size Download File type/resource
GSM498452_UZHRCC008_HG-U133.CEL.gz 2.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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