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Sample GSM498454 Query DataSets for GSM498454
Status Public on Jul 24, 2012
Title UZHRCC010_RCC_clear_cell_S1_BI_mRNA_rep2
Sample type RNA
Source name renal cell carcinoma ,clear cell RCC
Organism Homo sapiens
Characteristics grade: 1
stage: 2
sample type: neoplasia
icd-o 3 code: 8310/3
icd-o 3 diagnosis text: clear cell renal cell carcinoma
organ site: kidney
gender: NA
tissue type: renal cell carcinoma [clear cell RCC]
cluster id: B
Treatment protocol untreated tissue and cell line samples
Growth protocol untreated tissue and cell line samples
Extracted molecule total RNA
Extraction protocol All tumor tissues were selected according to the histologically verified presence of at least 80% tumor cells. RNA was extracted using the RNeasy minikit (Qiagen).
Label Biotin
Label protocol standard Affymetrix protocol; Broad institute
Hybridization protocol standard Affymetrix protocol; Broad institute
Scan protocol standard Affymetrix protocol; Broad institute
Description n/a
Data processing Affymetrix GeneChip data was normalized using MAS5 from Bioconductor
Submission date Jan 19, 2010
Last update date Jul 25, 2012
Contact name Michael Baudis
Organization name University of Zurich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zurich
ZIP/Postal code 8057
Country Switzerland
Platform ID GPL3921
Series (1)
GSE19949 Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome

Data table header descriptions
VALUE MAS 5 signal

Data table
1007_s_at 2428.52906530827 0.00998541501665895
1053_at 683.385336191611 0.39799368200131
117_at 218.145032071757 0.95100536473837
121_at 2769.57351732795 0.00189168996574973
1255_g_at 84.1528554295154 0.872354690912682
1294_at 2181.04277948859 0.0170004527476119
1316_at 1870.09813478143 0.00653199150688288
1320_at 177.530220982169 0.861234831712328
1405_i_at 623.294146718856 0.53751088597471
1431_at 411.304131092077 0.520619670302202
1438_at 82.9626175677964 0.861234831712328
1487_at 1980.76386788421 0.218983228722879
1494_f_at 1752.75339671264 0.117160551558806
1598_g_at 1113.69035715348 0.218983228722879
160020_at 756.215999820188 0.339557899861190
1729_at 708.814763683943 0.302547472472011
1773_at 638.06675025183 0.358690519664824
177_at 270.304065317249 0.715252887758118
179_at 734.151957361808 0.500000024038353
1861_at 1366.38961403226 0.107301013337028

Total number of rows: 22277

Table truncated, full table size 999 Kbytes.

Supplementary file Size Download File type/resource
GSM498454_UZHRCC010_HG-U133.CEL.gz 2.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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