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Sample GSM498456 Query DataSets for GSM498456
Status Public on Jul 24, 2012
Title UZHRCC012_RCC_clear_cell_S1_BI_mRNA_rep4
Sample type RNA
 
Source name renal cell carcinoma ,clear cell RCC
Organism Homo sapiens
Characteristics grade: 1
stage: 1
sample type: neoplasia
icd-o 3 code: 8310/3
icd-o 3 diagnosis text: clear cell renal cell carcinoma
organ site: kidney
gender: NA
tissue type: renal cell carcinoma [clear cell RCC]
cluster id: A
Treatment protocol untreated tissue and cell line samples
Growth protocol untreated tissue and cell line samples
Extracted molecule total RNA
Extraction protocol All tumor tissues were selected according to the histologically verified presence of at least 80% tumor cells. RNA was extracted using the RNeasy minikit (Qiagen).
Label Biotin
Label protocol standard Affymetrix protocol; Broad institute
 
Hybridization protocol standard Affymetrix protocol; Broad institute
Scan protocol standard Affymetrix protocol; Broad institute
Description n/a
Data processing Affymetrix GeneChip data was normalized using MAS5 from Bioconductor
 
Submission date Jan 19, 2010
Last update date Jul 25, 2012
Contact name Michael Baudis
E-mail(s) mbaudis@gmail.com
Organization name University of Zurich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zurich
ZIP/Postal code 8057
Country Switzerland
 
Platform ID GPL3921
Series (1)
GSE19949 Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome

Data table header descriptions
ID_REF
VALUE MAS 5 signal
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 2961.13005158717 0.000218931723439231
1053_at 131.59146017613 0.302547472472011
117_at 300.053180354629 0.107301013337028
121_at 8938.55355363638 0.000218931723439231
1255_g_at 25.7181242393675 0.849472883187107
1294_at 2013.23526632936 0.000265668291059673
1316_at 414.465541903274 0.00358491505551828
1320_at 23.2279670695458 0.749276323308829
1405_i_at 970.523383975743 0.00459074544275739
1431_at 29.6496750301293 0.458815762471625
1438_at 19.5250743256046 0.795977945208882
1487_at 602.487587270118 0.0130917803336117
1494_f_at 280.00072985847 0.0193034606115381
1598_g_at 4715.09112686605 0.000265668291059673
160020_at 473.370280841768 0.0130917803336117
1729_at 1626.18664041017 0.000561750533455418
1773_at 79.1835848395411 0.438360877852572
177_at 143.450630102835 0.339557899861190
179_at 475.676161135557 0.218983228722879
1861_at 586.312560965995 0.0130917803336117

Total number of rows: 22277

Table truncated, full table size 1015 Kbytes.




Supplementary file Size Download File type/resource
GSM498456_UZHRCC012_HG-U133.CEL.gz 2.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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