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Sample GSM498457 Query DataSets for GSM498457
Status Public on Jul 24, 2012
Title UZHRCC013_RCC_clear_cell_S1_BI_mRNA_rep5
Sample type RNA
Source name renal cell carcinoma ,clear cell RCC
Organism Homo sapiens
Characteristics grade: 2
stage: 2
sample type: neoplasia
icd-o 3 code: 8310/3
icd-o 3 diagnosis text: clear cell renal cell carcinoma
organ site: kidney
gender: female
tissue type: renal cell carcinoma [clear cell RCC]
cluster id: B
Treatment protocol untreated tissue and cell line samples
Growth protocol untreated tissue and cell line samples
Extracted molecule total RNA
Extraction protocol All tumor tissues were selected according to the histologically verified presence of at least 80% tumor cells. RNA was extracted using the RNeasy minikit (Qiagen).
Label Biotin
Label protocol standard Affymetrix protocol; Broad institute
Hybridization protocol standard Affymetrix protocol; Broad institute
Scan protocol standard Affymetrix protocol; Broad institute
Description n/a
Data processing Affymetrix GeneChip data was normalized using MAS5 from Bioconductor
Submission date Jan 19, 2010
Last update date Jul 25, 2012
Contact name Michael Baudis
Organization name University of Zurich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zurich
ZIP/Postal code 8057
Country Switzerland
Platform ID GPL3921
Series (1)
GSE19949 Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome

Data table header descriptions
VALUE MAS 5 signal

Data table
1007_s_at 2815.91249830135 0.000218931723439231
1053_at 98.1078070870905 0.581930621987625
117_at 711.456472763725 0.0218663754408572
121_at 5058.86599473038 0.000265668291059673
1255_g_at 24.2012231287252 0.988552641512382
1294_at 3964.8450990524 0.000561750533455418
1316_at 586.68783859784 0.0247109146315260
1320_at 23.0356472550509 0.968664367582658
1405_i_at 2257.73834588288 0.000761703439073891
1431_at 301.920126355916 0.175989407541403
1438_at 38.1348815303859 0.918663285785941
1487_at 667.982419234538 0.0894050784997029
1494_f_at 358.895209899158 0.234556513288975
1598_g_at 4989.56704963542 0.000388260071267577
160020_at 664.911388764163 0.0544704352628045
1729_at 1278.87680029536 0.00564280932389138
1773_at 209.020361862769 0.302547472472011
177_at 731.16604091926 0.150527116812893
179_at 121.144416625641 0.500000024038353
1861_at 117.691375742696 0.438360877852572

Total number of rows: 22277

Table truncated, full table size 1011 Kbytes.

Supplementary file Size Download File type/resource
GSM498457_UZHRCC013_HG-U133.CEL.gz 2.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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