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Sample GSM498461 Query DataSets for GSM498461
Status Public on Jul 24, 2012
Title UZHRCC017_RCC_clear_cell_S3_BI_mRNA_rep4
Sample type RNA
 
Source name renal cell carcinoma ,clear cell RCC
Organism Homo sapiens
Characteristics grade: 2
stage: 3
sample type: neoplasia
icd-o 3 code: 8310/3
icd-o 3 diagnosis text: clear cell renal cell carcinoma
organ site: kidney
gender: male
tissue type: renal cell carcinoma [clear cell RCC]
cluster id: C
Treatment protocol untreated tissue and cell line samples
Growth protocol untreated tissue and cell line samples
Extracted molecule total RNA
Extraction protocol All tumor tissues were selected according to the histologically verified presence of at least 80% tumor cells. RNA was extracted using the RNeasy minikit (Qiagen).
Label Biotin
Label protocol standard Affymetrix protocol; Broad institute
 
Hybridization protocol standard Affymetrix protocol; Broad institute
Scan protocol standard Affymetrix protocol; Broad institute
Description n/a
Data processing Affymetrix GeneChip data was normalized using MAS5 from Bioconductor
 
Submission date Jan 19, 2010
Last update date Jul 25, 2012
Contact name Michael Baudis
E-mail(s) mbaudis@gmail.com
Organization name University of Zurich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zurich
ZIP/Postal code 8057
Country Switzerland
 
Platform ID GPL3921
Series (1)
GSE19949 Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome

Data table header descriptions
ID_REF
VALUE MAS 5 signal
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 2430.72303780078 0.000265668291059673
1053_at 504.626097977540 0.00653199150688288
117_at 173.843953284777 0.0114473584876184
121_at 2519.31817789792 0.000218931723439231
1255_g_at 2.73043058956697 0.995137206827588
1294_at 961.497778581476 0.000388260071267577
1316_at 109.017589246853 0.00653199150688288
1320_at 9.00983854772086 0.581930621987625
1405_i_at 917.989067250847 0.000490828564953416
1431_at 68.7656086468488 0.0130917803336117
1438_at 97.424099734717 0.0247109146315260
1487_at 528.713113530546 0.00486279317241156
1494_f_at 155.946308677795 0.0393653623784268
1598_g_at 1785.0443453312 0.000218931723439231
160020_at 382.684923689971 0.00261701434183192
1729_at 2155.92660289604 0.000218931723439231
1773_at 141.574060047520 0.00358491505551828
177_at 274.368267342584 0.00653199150688288
179_at 250.436957591578 0.107301013337028
1861_at 663.007464771786 0.000218931723439231

Total number of rows: 22277

Table truncated, full table size 1020 Kbytes.




Supplementary file Size Download File type/resource
GSM498461_UZHRCC017_HG-U133.CEL.gz 2.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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