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Sample GSM498463 Query DataSets for GSM498463
Status Public on Jul 24, 2012
Title UZHRCC019_RCC_clear_cell_S3_BI_mRNA_rep6
Sample type RNA
 
Source name renal cell carcinoma ,clear cell RCC
Organism Homo sapiens
Characteristics grade: 3
stage: 3
sample type: neoplasia
icd-o 3 code: 8310/3
icd-o 3 diagnosis text: clear cell renal cell carcinoma
organ site: kidney
gender: male
tissue type: renal cell carcinoma [clear cell RCC]
cluster id: A
Treatment protocol untreated tissue and cell line samples
Growth protocol untreated tissue and cell line samples
Extracted molecule total RNA
Extraction protocol All tumor tissues were selected according to the histologically verified presence of at least 80% tumor cells. RNA was extracted using the RNeasy minikit (Qiagen).
Label Biotin
Label protocol standard Affymetrix protocol; Broad institute
 
Hybridization protocol standard Affymetrix protocol; Broad institute
Scan protocol standard Affymetrix protocol; Broad institute
Description n/a
Data processing Affymetrix GeneChip data was normalized using MAS5 from Bioconductor
 
Submission date Jan 19, 2010
Last update date Jul 25, 2012
Contact name Michael Baudis
E-mail(s) mbaudis@gmail.com
Organization name University of Zurich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zurich
ZIP/Postal code 8057
Country Switzerland
 
Platform ID GPL3921
Series (1)
GSE19949 Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome

Data table header descriptions
ID_REF
VALUE MAS 5 signal
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 4306.85307382639 0.000218931723439231
1053_at 593.330424373735 0.00189168996574973
117_at 93.5896038705524 0.284747112241882
121_at 2462.87913161604 0.000218931723439231
1255_g_at 9.51346219701424 0.945529564737196
1294_at 1001.78871674819 0.000388260071267577
1316_at 196.047460387731 0.0114473584876184
1320_at 42.7228954289528 0.621815485272688
1405_i_at 698.505031481142 0.00061257421359262
1431_at 151.967012184569 0.00754291211463898
1438_at 171.477182533098 0.0170004527476119
1487_at 594.264000897179 0.00261701434183192
1494_f_at 131.265510549410 0.0604193419667967
1598_g_at 4290.58725246771 0.000218931723439231
160020_at 1034.68996941301 0.000265668291059673
1729_at 1626.45718980795 0.000265668291059673
1773_at 11.8793526285279 0.66044210013881
177_at 151.402379240717 0.0544704352628045
179_at 151.492943083655 0.500000024038353
1861_at 407.839530770015 0.000321571279513932

Total number of rows: 22277

Table truncated, full table size 1020 Kbytes.




Supplementary file Size Download File type/resource
GSM498463_UZHRCC019_HG-U133.CEL.gz 2.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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