|
| Status |
Public on Jul 24, 2012 |
| Title |
UZHRCC020_RCC_clear_cell_S4_BI_mRNA_rep1 |
| Sample type |
RNA |
| |
|
| Source name |
renal cell carcinoma ,clear cell RCC
|
| Organism |
Homo sapiens |
| Characteristics |
grade: 1
stage: 3
sample type: neoplasia
icd-o 3 code: 8310/3
icd-o 3 diagnosis text: clear cell renal cell carcinoma
organ site: kidney
gender: male
tissue type: renal cell carcinoma [clear cell RCC]
cluster id: C
|
| Treatment protocol |
untreated tissue and cell line samples
|
| Growth protocol |
untreated tissue and cell line samples
|
| Extracted molecule |
total RNA |
| Extraction protocol |
All tumor tissues were selected according to the histologically verified presence of at least 80% tumor cells. RNA was extracted using the RNeasy minikit (Qiagen).
|
| Label |
Biotin
|
| Label protocol |
standard Affymetrix protocol; Broad institute
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol; Broad institute
|
| Scan protocol |
standard Affymetrix protocol; Broad institute
|
| Description |
n/a
|
| Data processing |
Affymetrix GeneChip data was normalized using MAS5 from Bioconductor
|
| |
|
| Submission date |
Jan 19, 2010 |
| Last update date |
Jul 25, 2012 |
| Contact name |
Michael Baudis |
| E-mail(s) |
mbaudis@gmail.com
|
| Organization name |
University of Zurich
|
| Department |
Institute of Molecular Life Sciences
|
| Street address |
Winterthurerstrasse 190
|
| City |
Zurich |
| ZIP/Postal code |
8057 |
| Country |
Switzerland |
| |
|
| Platform ID |
GPL3921 |
| Series (1) |
| GSE19949 |
Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome |
|
