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Sample GSM498464 Query DataSets for GSM498464
Status Public on Jul 24, 2012
Title UZHRCC020_RCC_clear_cell_S4_BI_mRNA_rep1
Sample type RNA
Source name renal cell carcinoma ,clear cell RCC
Organism Homo sapiens
Characteristics grade: 1
stage: 3
sample type: neoplasia
icd-o 3 code: 8310/3
icd-o 3 diagnosis text: clear cell renal cell carcinoma
organ site: kidney
gender: male
tissue type: renal cell carcinoma [clear cell RCC]
cluster id: C
Treatment protocol untreated tissue and cell line samples
Growth protocol untreated tissue and cell line samples
Extracted molecule total RNA
Extraction protocol All tumor tissues were selected according to the histologically verified presence of at least 80% tumor cells. RNA was extracted using the RNeasy minikit (Qiagen).
Label Biotin
Label protocol standard Affymetrix protocol; Broad institute
Hybridization protocol standard Affymetrix protocol; Broad institute
Scan protocol standard Affymetrix protocol; Broad institute
Description n/a
Data processing Affymetrix GeneChip data was normalized using MAS5 from Bioconductor
Submission date Jan 19, 2010
Last update date Jul 25, 2012
Contact name Michael Baudis
Organization name University of Zurich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zurich
ZIP/Postal code 8057
Country Switzerland
Platform ID GPL3921
Series (1)
GSE19949 Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome

Data table header descriptions
VALUE MAS 5 signal

Data table
1007_s_at 2117.6950172912 0.000218931723439231
1053_at 319.924310798166 0.000804663736227673
117_at 91.4572527247835 0.0544704352628045
121_at 1392.21305716111 0.000218931723439231
1255_g_at 4.9061933985512 0.956032226962858
1294_at 804.230038603715 0.000218931723439231
1316_at 98.6804499611004 0.00222774001425785
1320_at 7.45853129319448 0.561639122147428
1405_i_at 383.846858927109 0.000490828564953416
1431_at 100.221814338153 0.00564280932389138
1438_at 84.4762404356551 0.000561750533455418
1487_at 597.974034279275 0.00754291211463898
1494_f_at 99.2031217209031 0.00653199150688288
1598_g_at 2356.47034083265 0.000265668291059673
160020_at 307.504955708671 0.00135392311184868
1729_at 1497.97737521977 0.000218931723439231
1773_at 184.620730270323 0.00564280932389138
177_at 133.214714316591 0.0247109146315260
179_at 186.031854708908 0.175989407541403
1861_at 688.022390916226 0.000218931723439231

Total number of rows: 22277

Table truncated, full table size 1022 Kbytes.

Supplementary file Size Download File type/resource
GSM498464_UZHRCC020_HG-U133.CEL.gz 2.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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