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Sample GSM498466 Query DataSets for GSM498466
Status Public on Jul 24, 2012
Title UZHRCC022_RCC_clear_cell_S4_BI_mRNA_rep3
Sample type RNA
Source name renal cell carcinoma ,clear cell RCC
Organism Homo sapiens
Characteristics grade: 2
stage: 3
sample type: neoplasia
icd-o 3 code: 8310/3
icd-o 3 diagnosis text: clear cell renal cell carcinoma
organ site: kidney
gender: NA
tissue type: renal cell carcinoma [clear cell RCC]
cluster id: C
Treatment protocol untreated tissue and cell line samples
Growth protocol untreated tissue and cell line samples
Extracted molecule total RNA
Extraction protocol All tumor tissues were selected according to the histologically verified presence of at least 80% tumor cells. RNA was extracted using the RNeasy minikit (Qiagen).
Label Biotin
Label protocol standard Affymetrix protocol; Broad institute
Hybridization protocol standard Affymetrix protocol; Broad institute
Scan protocol standard Affymetrix protocol; Broad institute
Description n/a
Data processing Affymetrix GeneChip data was normalized using MAS5 from Bioconductor
Submission date Jan 19, 2010
Last update date Jul 25, 2012
Contact name Michael Baudis
Organization name University of Zurich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zurich
ZIP/Postal code 8057
Country Switzerland
Platform ID GPL3921
Series (1)
GSE19949 Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome

Data table header descriptions
VALUE MAS 5 signal

Data table
1007_s_at 871.024582442378 0.000218931723439231
1053_at 482.93400183853 0.000959451008767043
117_at 160.828747762546 0.0218663754408572
121_at 1323.72414585787 0.000218931723439231
1255_g_at 38.6103137228233 0.438360877852572
1294_at 585.984818890242 0.000388260071267577
1316_at 69.8029729729179 0.000804663736227673
1320_at 76.6293316181307 0.0489946352616306
1405_i_at 734.488798917125 0.000490828564953416
1431_at 52.7364690033058 0.0668649772942342
1438_at 50.1435860688073 0.0813367142140589
1487_at 501.694594668015 0.00754291211463898
1494_f_at 100.381003302346 0.0544704352628045
1598_g_at 1619.53693065027 0.000218931723439231
160020_at 440.768597349406 0.000804663736227673
1729_at 1622.3915127962 0.000265668291059673
1773_at 279.49395924125 0.00653199150688288
177_at 122.468280291502 0.00998541501665895
179_at 159.918575120993 0.189687302191894
1861_at 584.650914012137 0.000218931723439231

Total number of rows: 22277

Table truncated, full table size 1021 Kbytes.

Supplementary file Size Download File type/resource
GSM498466_UZHRCC022_HG-U133.CEL.gz 2.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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