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Sample GSM506855 Query DataSets for GSM506855
Status Public on Mar 05, 2011
Title Genotyping data from one patient with unexplained mental retardation and a deletion in 15q13 (patient 1)
Sample type genomic
 
Source name whole blood from patient
Organism Homo sapiens
Characteristics cell type: whole blood from patient
Extracted molecule genomic DNA
Extraction protocol Standard DNA isolation Kit from whole blood with promega maxwell-technology.
Label biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description Genotyping data from patients with unexplained mental retardation
Data processing We identified genome-wide CNV using Affymetrix Genotyping Console (GTC), which uses a Hidden Markov Model (HMM) algorithm to calculate copy numbers.
 
Submission date Feb 05, 2010
Last update date Mar 05, 2011
Contact name Michael Bonin
Organization name University Tuebingen
Department Medical Genetics
Lab Microarray Facility
Street address CAlwerstr. 7
City Tuebingen
State/province BW
ZIP/Postal code 72076
Country Germany
 
Platform ID GPL6801
Series (1)
GSE20564 Genotyping data from one patient with unexplained mental retardation and a deletion in 15q13

Data table header descriptions
ID_REF
VALUE Genotypes (AA,AB,BB)

Data table
ID_REF VALUE
SNP_A-2131660 BB
SNP_A-1967418 AB
SNP_A-1969580 BB
SNP_A-4263484 AB
SNP_A-1978185 AA
SNP_A-4264431 AB
SNP_A-1980898 BB
SNP_A-1983139 AA
SNP_A-4265735 AA
SNP_A-1995832 AA
SNP_A-1995893 AA
SNP_A-1997689 BB
SNP_A-1997709 AA
SNP_A-1997896 AA
SNP_A-1997922 AA
SNP_A-2000230 AA
SNP_A-2000332 AB
SNP_A-2000337 AA
SNP_A-2000342 AA
SNP_A-4268173 AA

Total number of rows: 909622

Table truncated, full table size 15163 Kbytes.




Supplementary file Size Download File type/resource
GSM506855.CEL.gz 27.0 Mb (ftp)(http) CEL
GSM506855_GenomeWideSNP_6_.CN5.CNCHP.gz 35.0 Mb (ftp)(http) CNCHP
Processed data included within Sample table
Processed data provided as supplementary file

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