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Sample GSM5071290 Query DataSets for GSM5071290
Status Public on Apr 27, 2021
Title rfl8-3HA_(1)
Sample type SRA
Source name rfl8-3HA_1
Organism Arabidopsis thaliana
Characteristics genotype: wild type (rfl8 rfl8 CDS fused in frame with 3-HA tag)
growth: planting-date=12-FEB-19,harvest-date=29-MAR-19
tissue: flower
Treatment protocol RNAseI-genetic treatment-enzymatic,earthworms-rnaseqi RNaseI treatment of mitochondrial extracts
Growth protocol Plants were grown in a greenhouse, in soil, in long day condition
Extracted molecule total RNA
Extraction protocol rfl8-3HA_1(2mg)
rna_selection:ribosomal depletion, single, stranded:no, Protocol:5132-05-NEXTflex-Small-RNA-Seq-v3-16-06.pdf
Library strategy RIP-Seq
Library source transcriptomic
Library selection other
Instrument model Illumina NextSeq 500
Data processing Genome_build: genome of Arabidopsis mitochondrial genome
genome mapping and counts of reads by gene locus are done with STAR; exact multihits are removed and count only consistent PE reads (in PE case).
Supplementary_files_format_and_content: type:count file (txt); content:GeneID,counts
Submission date Feb 09, 2021
Last update date Apr 28, 2021
Contact name VĂ©ronique BRUNAUD
Organization name INRA - CNRS - UPSUD
Lab IPS2
Street address rue Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
Platform ID GPL19580
Series (2)
GSE166447 RNaseI-RIPseq for rfl8-Functional characterization of the pentatricopeptide repeat protein PPR RFL8
GSE166459 Nuclear compensation to a lineage-specific mitochondrial genomic rearrangement in plants
BioSample SAMN17841295
SRA SRX10058392

Supplementary file Size Download File type/resource
GSM5071290_featcount_rfl8-3HA_1.txt.gz 289 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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