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Sample GSM513260 Query DataSets for GSM513260
Status Public on Feb 25, 2010
Title 0 Dis XIV batch RNA
Sample type RNA
 
Channel 1
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Growth protocol Media : minus His plus G418
Extracted molecule total RNA
Extraction protocol Extraction method: acid phenol prep:
http://dunham.gs.washington.edu/MDyeastRNA.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentRNA.pdf
 
Channel 2
Source name Dis XIV
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis XIV
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Growth protocol Media : minus His plus G418
Extracted molecule total RNA
Extraction protocol Extraction method: acid phenol prep:
http://dunham.gs.washington.edu/MDyeastRNA.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentRNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentRNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2009-06-26
Scan Time : 08:32:41
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis XIV batch RNA
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -1.183 26.63484 60.48604 126.5897 94.79487
2 0 2.795111 5.555448 88.46875 61.25
3 0 2.840315 5.62097 98.05714 60.71429
4 -.01 1333.636 1343.146 1410.389 684.9444
5 .377 1552.483 1195.531 1605.568 611.2703
6 -.739 2864.925 4780.842 2846.853 2225.382
7 .02 2800.494 2761.521 2755.838 1301.541
8 .194 8889.065 7769.375 8454.27 3512.432
10 -.423 65.02629 87.15947 157 103.5263
11 1.21 14.83255 6.409453 110.2703 68.08108
12 .061 1131.429 1084.421 1129.657 531.9714
13 .19 199.0683 174.5268 277.0571 139.6
14 .211 15.21383 13.14056 109.7632 70.34211
15 .123 180.4314 165.6717 258.4211 134.6579
16 .413 18578.45 13952.99 16788.85 5938.463
17 -.017 1650.856 1670.049 1575.345 764.1379
18 -.49 35.83935 50.34495 127.4054 84.97297
19 .267 2641.258 2194.73 2455.265 976.5882
20 -.396 68.86759 90.62671 156.5429 101.1429
21 .556 856.8728 583.0035 859.6216 304.4054

Total number of rows: 13048

Table truncated, full table size 582 Kbytes.




Supplementary file Size Download File type/resource
GSM513260.txt.gz 4.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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