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Sample GSM513281 Query DataSets for GSM513281
Status Public on Feb 25, 2010
Title 0 Dis II-9.2 (A25037)
Sample type genomic
 
Channel 1
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name Dis II-9.2 (A25037)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis II-9.2 (A25037)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2009-06-18
Scan Time : 13:24:55
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis II-9.2 (A25037)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -.047 280.0226 289.2776 6674.824 4396.382
2 0 .2550042 .2794413 112.2727 75.48485
3 0 .2535049 .2808732 112.5 72.71053
4 -.049 861.4296 891.4771 20611.85 13160.13
5 -.132 1106.673 1212.692 26590.94 17806.06
6 -.01 865.8731 871.7011 20942.67 12780.13
7 .026 762.1277 748.4666 18545.58 10956
8 -.318 1350.737 1684.153 32938.68 24497.76
10 -.156 899.2616 1001.966 22198.47 14574.74
11 -.246 1165.29 1382.247 28861.14 20059.17
12 -.265 843.3127 1013.691 21025.13 14734.59
13 -.246 931.1023 1104.126 23305.47 16045.05
14 -.097 839.5202 897.8806 21114.82 13068.09
15 -.109 856.7145 923.9672 21639.82 13462.15
16 .009 906.3377 900.8711 22982.03 13146.58
17 .977 2163.256 1098.642 54877.89 16035.97
18 .085 1277.952 1204.532 32597.51 17607.16
19 -.012 830.8417 837.5463 21317.22 12293.35
20 -.097 1470.527 1572.459 37759 23061.95
21 -.008 828.9252 833.6635 21412.3 12293.73

Total number of rows: 13048

Table truncated, full table size 589 Kbytes.




Supplementary file Size Download File type/resource
GSM513281.txt.gz 4.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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