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Sample GSM513286 Query DataSets for GSM513286
Status Public on Feb 25, 2010
Title 0 Dis VIII-9.1 (A25042)
Sample type genomic
 
Channel 1
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name Dis VIII-9.1 (A25042)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis VIII-9.1 (A25042)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2009-06-02
Scan Time : 13:00:44
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis VIII-9.1 (A25042)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL7542
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 .01 760.0591 755.0513 12003.51 7111.746
2 .69 23.97444 14.85564 577.4107 302.9107
3 .621 56.56207 36.77569 1065.895 502.6316
4 .714 42.13219 25.68631 844.3519 401.5741
5 .461 35.34167 25.67134 741.3148 401.463
6 .039 19.04636 18.53388 504.1346 337.6538
7 .446 18.32833 13.45303 495.3529 292.6275
8 .107 25.00117 23.2205 591.7931 379.9138
9 .663 23.35164 14.75041 570.28 305.36
10 1.87 18.55731 5.077816 505.5926 220.9815
11 .541 8.35899 5.744193 367.3167 227.5
12 -.088 1090.238 1159.035 15204.72 10330.16
13 .026 1193.956 1173.035 16538.13 10423.68
14 -.082 1104.085 1168.724 15243.12 10360.17
15 -.091 840.5068 895.4857 11623.18 7962.393
16 -.131 903.11 989.2155 12428.07 8758.15
17 .934 1593.35 833.8114 21661.67 7397.15
18 -.016 1265.023 1278.935 17220.61 11229.81
19 -.043 504.9021 520.0701 7034.379 4669.776
20 .045 1432.556 1388.387 19423.29 12143.48

Total number of rows: 45209

Table truncated, full table size 2059 Kbytes.




Supplementary file Size Download File type/resource
GSM513286.txt.gz 12.9 Mb (ftp)(http) TXT
Processed data included within Sample table

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