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Sample GSM513304 Query DataSets for GSM513304
Status Public on Feb 25, 2010
Title 0 Dis XI-14.1 (A25074)
Sample type genomic
 
Channel 1
Source name Dis XI-14.1 (A25074)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis XI-14.1 (A25074)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2007-11-07
Scan Time : 10:50:50
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis XI-14.1 (A25074)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL7542
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -0.131 1008.103 920.7156 16336.63 12998.22
2 0 .5738084 .7462367 120.6441 175.7288
3 0 .5711724 .7425103 119.7619 181.2857
4 0 .5691118 .7395567 127.6774 175.5323
5 0 .5669831 .7365371 120.8833 177.5167
6 0 .5653837 .7342299 121.8852 161.5738
7 0 .5639086 .7320983 125.3115 169.541
8 0 .5626453 .7302692 128.5167 174.9
9 0 .561495 .728598 130.6563 179.0625
10 0 .5607951 .7275411 127.05 168.0667
11 0 .5602058 .7266411 136.85 184.5
12 -0.001 1138.229 1137.359 18974.54 16541.59
13 -0.437 1459.985 1078.583 24306.4 15704.97
14 0.013 902.914 910.8401 15095.63 13300.98
15 0.987 940.4707 1863.702 15714.27 27011.05
16 -0.329 1297.793 1033.473 21627.69 15064.3
17 0.11 965.7567 1042.576 16124.24 15189.06
18 -0.166 1274.171 1135.745 21213.98 16519.76
19 0.03 689.8198 704.4409 11543.52 10311.92
20 -0.124 1377.664 1264.51 22885.22 18339.36

Total number of rows: 45209

Table truncated, full table size 2100 Kbytes.




Supplementary file Size Download File type/resource
GSM513304.txt.gz 12.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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