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Sample GSM513308 Query DataSets for GSM513308
Status Public on Feb 25, 2010
Title 0 Dis I-UBP6del; (A22025)
Sample type genomic
 
Channel 1
Source name Dis I-UBP6del (A22025)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis I-UBP6del (A22025)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2008-10-02
Scan Time : 16:30:59
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis I-UBP6∆ (A22025)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Apr 30, 2013
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -0.817 2826.753 1605.071 32626.89 6365.568
2 0.457 3.810313 5.230067 176.9211 121.9474
3 1.151 5.076047 11.27174 191.2703 144.2973
4 0.046 752.228 776.465 8779.618 3065.559
5 0.145 1229.749 1359.592 14268.59 5262.735
6 -0.072 819.0668 779.2586 9547.707 3045.366
7 0.001 786.334 786.9935 9171.406 3062.656
8 0.001 1313.153 1314.222 15227.21 5032.718
10 0.212 975.9104 1130.031 11350.57 4321.946
11 0.196 1401.121 1604.976 16238.37 6091.316
12 -0.042 1078.037 1047.389 12524.53 4005.417
13 0.329 1121.38 1408.408 13022.76 5353.711
14 -0.066 1033.63 987.3514 12014.08 3783.639
15 0.345 666.7851 846.7087 7797.229 3261.657
16 0.149 580.6832 644.0577 6807.538 2507.385
17 0.212 1393.677 1613.895 16153 6153.97
18 0.105 999.0342 1074.631 11616.75 4138.75
19 0.546 534.8497 780.6587 6281.216 3039.703
20 -0.028 1359.853 1334.076 15765.03 5146.4
21 -0.138 801.6017 728.616 9348.405 2862.351

Total number of rows: 13048

Table truncated, full table size 599 Kbytes.




Supplementary file Size Download File type/resource
GSM513308.txt.gz 4.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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