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Sample GSM513310 Query DataSets for GSM513310
Status Public on Feb 25, 2010
Title 0 Dis II-E256X (A22368)
Sample type genomic
 
Channel 1
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name Dis II-E256X (A22368)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis II-E256X (A22368)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2008-11-05
Scan Time : 15:22:26
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis II-E256X (A22368)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 .349 1127.712 885.2759 6789.051 7802.641
2 0 2.168678 2.223504 103.5135 126.7027
3 0 2.168678 2.223504 109.8333 124.9167
4 .127 671.3956 614.9478 4097.351 5468.108
5 .099 1047.668 978.5078 6317.389 8604.083
6 -.302 564.2763 695.7045 3465.895 6163.763
7 .258 628.4316 525.3636 3844.541 4693.622
8 -.117 1251.735 1357.582 7521.769 11872.51
10 -.352 581.2947 742.1245 3567.378 6560.784
11 -.521 921.0797 1321.307 5572.278 11556.92
12 -.569 596.6766 885.1185 3659.075 7793.025
13 .326 1427.773 1138.724 8562.469 9980.188
14 -.279 647.3612 785.3045 3959.333 6930.278
15 -.309 560.2512 693.9941 3446.194 6141.639
16 .223 699.5324 599.2278 4268.649 5323.135
17 .93 2581.187 1354.769 15369.76 11840.66
18 -.042 845.9926 870.9397 5134.432 7665.73
19 -.154 563.4757 626.9834 3468.763 5560.526
20 .402 1678.911 1270.948 10049.97 11116.41
21 -.619 517.3426 794.7799 3198.821 7008.641

Total number of rows: 13048

Table truncated, full table size 586 Kbytes.




Supplementary file Size Download File type/resource
GSM513310.txt.gz 4.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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