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Sample GSM513311 Query DataSets for GSM513311
Status Public on Feb 25, 2010
Title 0 Dis II-GFP (A21956)
Sample type genomic
 
Channel 1
Source name Dis II-GFP (A21956)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis II-GFP (A21956)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2008-03-27
Scan Time : 12:11:51
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL7542
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -0.17 1818.415 1616.665 63253.81 7890.185
2 1.831 1.14722 4.080278 298.3684 229.6316
3 0 1.138866 2.173891 282.0938 188.3594
4 1.241 1.131159 2.67336 288.5873 222.4921
5 2.528 1.123788 6.483782 319.3469 241.3878
6 2.677 1.116926 7.141735 364.0678 244.7797
7 0 1.11062 2.075481 328.2295 218.5246
8 3.393 1.104452 11.60584 312.2593 268.0185
9 0 1.098864 2.033675 330.197 213.3788
10 2.44 1.093819 5.933601 352.1579 238.7544
11 0 1.088646 1.99687 324.7121 208.1061
12 -0.023 1494.233 1470.108 55469.28 8080.361
13 0.004 1645.523 1649.569 61284.69 9110.705
14 0.164 1341.614 1502.718 50218.51 8378.912
15 0.017 1446.27 1463.423 54289.85 8221.067
16 -0.013 1570.01 1556.016 59085.39 8783.712
17 0.012 1492.804 1505.478 56358.57 8555.361
18 0.025 1616.631 1644.463 61163.12 9377.754
19 0.032 1104.48 1128.993 42007.92 6536.279
20 -0.177 1617.281 1430.304 61468.79 8264.464

Total number of rows: 45209

Table truncated, full table size 2099 Kbytes.




Supplementary file Size Download File type/resource
GSM513311.txt.gz 12.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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