NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM513318 Query DataSets for GSM513318
Status Public on Feb 25, 2010
Title 0 Dis IX-GFP (A21960)
Sample type genomic
 
Channel 1
Source name Dis IX-GFP (A21960)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis IX-GFP (A21960)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2008-03-27
Scan Time : 12:12:54
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL7542
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 0.41 1152.716 1531.811 40573.96 7111.741
2 0 1.966274 5.112566 557.4909 266.2727
3 0 1.94664 5.02085 520.7258 244.6935
4 0 1.92889 4.938687 587.6719 341.4688
5 0 1.912168 4.861934 558.4098 298.9344
6 0 1.896297 4.789642 562.678 344.678
7 0 1.882295 4.72635 572.5439 375.3333
8 0 1.867673 4.660622 608.9063 359.2969
9 3.05 2.638507 21.85059 691.8033 460.1148
10 2.116 1.842879 7.989402 576.7869 389.5738
11 0 1.830355 4.494688 585.3051 297.1017
12 0.257 1102.53 1317.196 42310.95 7132.55
13 0.226 1531.891 1792.031 58875.41 9668.836
14 0.267 1048.429 1261.642 40691.86 6969.828
15 0.263 1280.632 1536.54 49824.55 8487.548
16 0.255 1347.007 1607.24 52610.5 8930.078
17 -0.112 1485.444 1374.186 58201.46 7738.508
18 0.969 1181.128 2312.071 46578.67 12881.93
19 -0.177 780.3362 690.3908 31087.01 4101.224
20 0.464 1613.452 2226.113 63881.36 12577.3

Total number of rows: 45209

Table truncated, full table size 2091 Kbytes.




Supplementary file Size Download File type/resource
GSM513318.txt.gz 12.7 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap