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Sample GSM513320 Query DataSets for GSM513320
Status Public on Feb 25, 2010
Title 0 Dis IX-ubp6-CA
Sample type genomic
 
Channel 1
Source name Dis IX-ubp6-CA
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis IX-ubp6-CA
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2009-07-09
Scan Time : 11:02:03
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis IX-ubp6-CA
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -0.023 89.46799 88.04161 358.4615 240.7436
2 -0.018 6.35737 6.277495 109.3056 69.80556
3 0 1.264875 1.6103 89.78378 57.78378
4 -0.162 358.1884 320.1649 1164.684 725.7368
5 0.098 729.7524 781.3153 2279.152 1689.485
6 0.277 382.9395 464.0428 1239.194 1026.444
7 0.085 544.8113 577.8893 1724.813 1264.406
8 -0.052 1347.187 1299.613 4131.286 2772.771
10 -0.121 676.0342 621.7904 2118.769 1356.333
11 -0.171 443.8804 394.163 1422.686 880.7143
12 0.169 733.4518 824.8399 2291.27 1780.865
13 0.174 193.9427 218.7864 673.4054 514.3784
14 0.062 1327.553 1386.134 4073.294 2954.088
15 0.2 514.0313 590.4055 1633.649 1291.216
16 -0.217 1100.557 947.1061 3392.8 2036.771
17 0.08 1014.302 1072.09 3134.27 2298.054
18 0.063 652.7135 682.0206 2050 1482.921
19 -0.004 324.7037 323.8253 1066.421 734.3947
20 -0.079 1053.917 997.5475 3253.5 2142.441
21 -0.098 551.7125 515.4919 1747.5 1135.059

Total number of rows: 13048

Table truncated, full table size 597 Kbytes.




Supplementary file Size Download File type/resource
GSM513320.txt.gz 4.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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