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Sample GSM513325 Query DataSets for GSM513325
Status Public on Feb 25, 2010
Title 0 Dis V-GFP-cup1-UBI4 (A25127)
Sample type genomic
 
Channel 1
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name Dis V-GFP-cup1-UBI4 (A25127)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis V-GFP-cup1-UBI4 (A25127)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2009-10-29
Scan Time : 09:21:43
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis V-GFP-cup1-UBI4 (A25127)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 .558 7500.277 5094.823 57451.7 18361.33
2 -1.219 14.58093 33.94443 406.5676 276.973
3 -1.613 18.82846 57.58227 434.4688 361.6563
4 -.345 790.9857 1004.688 6314.054 3746.324
5 -.212 1368.435 1584.999 10710.82 5820.667
6 .123 1248.007 1146.241 9791.892 4253.405
7 .214 881.5644 759.9346 6998.655 2873.345
8 -.271 1739.378 2098.822 13534.49 7658
10 .479 1103.13 791.4558 8683.333 2986.722
11 -.136 825.5689 907.2516 6566.706 3400.706
12 .244 1617.435 1365.464 12599.39 5038.278
13 -.348 2584.551 3289.297 19966.95 11913.14
14 1.12 2292.451 1054.819 17740.38 3928.73
15 .093 714.224 669.7974 5715.351 2553.108
16 -.151 445.6696 494.8582 3669.459 1928.243
17 -.306 1505.8 1860.996 11749.11 6810.324
18 .114 1693.155 1564.372 13180.95 5751.27
19 -.029 353.4568 360.5583 2981.179 1451.256
20 .063 3121.078 2988.353 24078.18 10843.95
21 -.121 1035.906 1126.696 8200 4195.135

Total number of rows: 13048

Table truncated, full table size 586 Kbytes.




Supplementary file Size Download File type/resource
GSM513325.txt.gz 4.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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