NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM513339 Query DataSets for GSM513339
Status Public on Feb 25, 2010
Title 0 Dis XI-del;ubp6-cup1-UBI4 (A25101)
Sample type genomic
 
Channel 1
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name Dis XI-delubp6-cup1-UBI4 (A25101)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis XI-delubp6-cup1-UBI4 (A25101)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2009-09-16
Scan Time : 09:05:03
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis XI-∆ubp6-cup1-UBI4 (A25101)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Apr 30, 2013
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 .218 1873.897 1611.239 20290.23 8871.286
2 -.191 5.93402 6.774604 203.4545 246.7576
3 0 .8901104 4.234709 113.7179 209.0769
4 .009 488.2261 485.0234 5390.946 2817.378
5 -.124 743.4001 810.3957 8135.676 4566.486
6 -.051 668.575 692.6206 7331.974 3933.816
7 .162 909.3658 812.6261 9922.425 4579.35
8 -.008 1170.937 1177.654 12736.42 6542.056
10 -.105 447.5808 481.3491 4959.973 2800.811
11 .485 1493.264 1066.811 16206.08 5948.676
12 -.194 859.8415 983.6667 9396.079 5502.711
13 -.034 1334.2 1365.676 14498.81 7557.081
14 -.021 1199.01 1216.356 13046.78 6755.444
15 1.062 1310.607 627.521 14248.62 3591.333
16 .056 734.7189 706.5751 8057.528 4017.25
17 .074 1397.34 1327.7 15184.77 7356.897
18 -.053 711.2048 737.8544 7808.514 4187.514
19 -.284 348.479 424.3155 3909.949 2503.179
20 .226 1802.881 1541.866 19552.41 8511.027
21 .243 827.9816 699.4369 9070.892 3983.649

Total number of rows: 13048

Table truncated, full table size 586 Kbytes.




Supplementary file Size Download File type/resource
GSM513339.txt.gz 4.0 Mb (ftp)(http) TXT
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap