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Sample GSM513343 Query DataSets for GSM513343
Status Public on Feb 25, 2010
Title 0 Dis XI-GFP (A21962)
Sample type genomic
 
Channel 1
Source name Dis XI-GFP (A21962)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis XI-GFP (A21962)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2008-03-27
Scan Time : 12:13:11
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL7542
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -0.108 1643.199 1524.506 64579.57 6191.294
2 5.653 1.557102 78.33915 758.5185 559.3333
3 4.145 1.548857 27.39718 706.6471 361.3333
4 4.454 1.54124 33.77862 818.9057 384.434
5 3.605 1.534792 18.6688 709.6102 325.9492
6 4.119 1.528966 26.56893 672.9063 354.6719
7 3.534 1.524124 17.65626 772.7895 320.2632
8 4.445 1.519632 33.10518 759.4 376.6167
9 0 1.515929 2.923591 612.9016 250.7541
10 3.18 1.512887 13.71278 775.9206 302.9841
11 0 1.510405 2.956597 629.3279 218.6721
12 0.015 1288.662 1302.028 52703.54 4972.678
13 0.18 1459.983 1653.536 59656.86 6215.431
14 0.153 1160.936 1290.925 47624.07 4883.431
15 1.125 1148.939 2505.225 47153.63 9197.3
16 0.1 1356.415 1453.644 55529.67 5416.508
17 -0.098 1408.148 1315.447 57601.2 4903.218
18 0.061 1438.453 1500.337 58801.57 5533.967
19 0.019 946.4257 958.8837 38921.6 3611.333
20 0.153 1518.367 1688.612 61930.93 6147.036

Total number of rows: 45209

Table truncated, full table size 2094 Kbytes.




Supplementary file Size Download File type/resource
GSM513343.txt.gz 12.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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