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Sample GSM513353 Query DataSets for GSM513353
Status Public on Feb 25, 2010
Title 0 Dis XIII-UBP6del; (A22034)
Sample type genomic
 
Channel 1
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name Dis XIII-UBP6del (A22034)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis XIII-UBP6del (A22034)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2008-09-08
Scan Time : 13:17:05
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis XIII-UBP6∆ (A22034)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Apr 30, 2013
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -.099 983.2905 1053.309 16675.97 26913.08
2 0 .3842906 .8688757 103.2941 89.52941
3 0 .3842906 .8688757 100.4737 85.94737
4 1.033 1544.767 754.703 26133.54 19311.3
5 .143 1277.733 1156.923 21635.49 29547.82
6 .027 895.744 879.1315 15201.22 22476.94
7 1.145 1447.125 654.3919 24488.4 16756.34
8 -.042 1246.556 1283.226 21109.83 32760.61
10 1.162 1731.566 773.556 29278.64 19787.47
11 -.026 1092.542 1112.201 18514.68 28405.97
12 -.057 879.6073 915.333 14927.61 23394.68
13 -.041 1017.599 1046.719 17251.43 26737.81
14 .057 943.3261 906.7667 15999.87 23174.87
15 .203 949.7093 825.2531 16106.82 21099.28
16 .068 710.3951 677.7325 12075.26 17343.8
17 -.016 1230.29 1244.408 20831.62 31765.97
18 .191 1347.6 1180.67 22806.86 30143.22
19 .178 1011.812 894.647 17150.22 22863
20 .087 1555.82 1464.591 26312.61 37368.61
21 -.124 792.8242 864.0392 13460.06 22083.21

Total number of rows: 13048

Table truncated, full table size 588 Kbytes.




Supplementary file Size Download File type/resource
GSM513353.txt.gz 4.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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