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Sample GSM513360 Query DataSets for GSM513360
Status Public on Feb 25, 2010
Title 0 Dis XV-GFP (A21966)
Sample type genomic
 
Channel 1
Source name 0 Dis XV-GFP (A21966)
Organism Saccharomyces cerevisiae
Characteristics strain name: 0 Dis XV-GFP (A21966)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2008-03-27
Scan Time : 12:14:31
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL7542
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -0.602 1263.098 832.2617 29395.07 7685.836
2 0 1.117849 1.62489 359.8276 265.9828
3 0 1.118276 1.621474 336.8 256.8167
4 0 1.118641 1.61824 333.8475 255.4576
5 0 1.118964 1.615131 341.7813 251.0313
6 0 1.119291 1.612268 359.8667 269.15
7 0 1.119561 1.609598 358.623 288.7541
8 0 1.119782 1.60708 366.9333 275.4833
9 0 1.119883 1.604651 379.6034 287.5
10 0 1.120072 1.602459 384.5397 261.2222
11 0 1.120116 1.600345 383.1833 268.8
12 0.129 954.341 1043.761 22237.59 9728.825
13 0.15 1187.596 1317.828 27573.89 12222.38
14 0.126 828.8156 904.3158 19361.71 8481.952
15 0.294 944.7149 1158.11 22010.18 10793.02
16 0.158 988.5355 1103.28 23013.83 10303.44
17 -0.228 976.8528 834.2965 22747.3 7863.705
18 -0.105 1056.965 982.8249 24581.37 9220.969
19 -0.241 679.8519 575.1158 15950.67 5511.333
20 1.238 988.2483 2330.303 23011.14 21518.94

Total number of rows: 45209

Table truncated, full table size 2097 Kbytes.




Supplementary file Size Download File type/resource
GSM513360.txt.gz 12.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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