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Sample GSM513362 Query DataSets for GSM513362
Status Public on Feb 25, 2010
Title 0 Dis XV-URA3 (A23516)
Sample type genomic
 
Channel 1
Source name Dis XV-URA3 (A23516)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis XV-URA3 (A23516)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2009-04-24
Scan Time : 10:37:44
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis XV-URA3 (A23516)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 0.04 2405.75 2472.614 63680.42 13033.33
2 0 .6304878 1.203117 134.6667 85.46154
3 0 .6296926 1.201304 161.0278 89.36111
4 -0.105 909.0025 845.209 24171.05 4558.973
5 1.194 1045.105 2390.822 27768.62 12697.26
6 -0.082 865.3013 817.4831 23024.47 4437.778
7 0.135 734.7272 806.747 19580.06 4396.412
8 0.09 1262.439 1344.029 33516.54 7271.257
10 0.124 953.8385 1039.144 25375 5704.462
11 -0.06 975.0347 935.5019 25937.91 5174.514
12 0.225 803.2518 938.8989 21405.54 5222.189
13 0.82 982.4526 1734.3 26140.21 9602.342
14 -0.115 859.257 793.3263 22890.52 4484.091
15 -0.029 904.0317 885.7472 24075.51 5024.649
16 0.648 741.5497 1161.905 19787.86 6598.222
17 0.173 1144.251 1290.213 30422.38 7364.378
18 0.696 1131.357 1833.31 30081.08 10488.38
19 1.098 888.0439 1901.342 23659.13 10951.29
20 -0.464 1541.61 1117.535 40916.76 6530.459
21 -0.402 865.5286 655.2142 23068.03 3903.829

Total number of rows: 13048

Table truncated, full table size 599 Kbytes.




Supplementary file Size Download File type/resource
GSM513362.txt.gz 4.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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