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Sample GSM513364 Query DataSets for GSM513364
Status Public on Feb 25, 2010
Title 0 Dis XVI-rpn6
Sample type genomic
 
Channel 1
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name Dis XVI-rpn6
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis XVI-rpn6
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2010-01-29
Scan Time : 08:53:45
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis XVI-rpn6
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Feb 24, 2010
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 .347 1802.999 1417.98 4474.872 1566.513
2 0 10.52301 13.90092 180.6774 93.77419
3 .111 17.21899 15.94544 197.0645 104.0968
4 -.221 809.2922 943.3521 2118.053 1076.737
5 .141 1301.924 1180.501 3355.973 1339.081
6 -.158 902.0006 1006.74 2413.027 1170.892
7 -.135 919.3867 1009.319 2506.212 1193.333
8 -.094 1573.364 1679.837 4278.622 1966.784
10 .144 689.0246 623.6851 2067.216 820.1892
11 .031 1171.764 1146.938 3512.351 1472.405
12 1.069 1605.153 765.3465 4912.811 1039.27
13 .111 1616.203 1496.002 5115.784 2004.459
14 -.104 895.054 961.6759 3005.15 1359.85
15 -.011 911.4805 918.3615 3168.875 1342.813
16 -.139 1037.517 1142.765 3724.571 1704.029
17 -.213 1586.082 1838.944 5816.583 2771.944
18 .005 836.23 833.2882 3255.784 1345.324
19 -.077 244.8079 258.2433 1099.444 492.1667
20 .039 1458.873 1419.507 5998.152 2375.848
21 -.26 653.8567 782.9288 2874.568 1392.054

Total number of rows: 13048

Table truncated, full table size 586 Kbytes.




Supplementary file Size Download File type/resource
GSM513364.txt.gz 4.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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