NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM513365 Query DataSets for GSM513365
Status Public on Feb 25, 2010
Title 0 Dis XVI-UBP6del; (A22037)
Sample type genomic
 
Channel 1
Source name wt
Organism Saccharomyces cerevisiae
Characteristics strain name: wt
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name Dis XVI-UBP6del (A22037)
Organism Saccharomyces cerevisiae
Characteristics strain name: Dis XVI-UBP6del (A22037)
Biomaterial provider Eduardo Torres, Amon Lab, MIT
Extracted molecule genomic DNA
Extraction protocol Extraction method: Hoffman-Winston prep:
http://dunham.gs.washington.edu/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL:
http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2008-09-08
Scan Time : 13:17:05
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
Description Detailed protocols are available in 'GSE20464_protocols.zip', which is linked to the Series GSE20464 record as a supplementary file.
0 Dis XVI-UBP6∆ (A22037)
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.1.3.1
Datafile type : Agilent result file
Normalizaton: Default settings of Agilent Feature Extractor
 
Submission date Feb 22, 2010
Last update date Apr 30, 2013
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL10045
Series (1)
GSE20464 Identification of Aneuploidy-Tolerating Mutations

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 .024 901.2728 886.5272 18810.67 19409.6
2 -.097 4.143758 4.430817 219.2414 260.1379
3 0 .4499511 .9467859 126.9706 115.7353
4 .076 1028.407 975.9527 21446.11 21427.16
5 .192 1335.946 1169.114 27819.68 25678.35
6 .096 1095.977 1025.538 22846.94 22585.74
7 .073 837.3098 795.8754 17486.75 17599.47
8 .023 1392.079 1369.808 28983.83 30245.14
10 .216 1227.705 1056.971 25577.95 23489.18
11 .216 1337.808 1151.581 27859.97 25647.64
12 1.067 1725.074 823.5052 35885.79 18436.36
13 -.025 1076.69 1095.262 22449.28 24542.92
14 .147 1115.263 1007.077 23248.94 22648.47
15 .175 991.3551 878.1134 20681.43 19829.95
16 .114 734.0954 678.5236 15350.41 15405.65
17 .071 1313.833 1250.474 27364.92 28365.63
18 .283 1504.175 1236.565 31309.75 28147.1
19 .235 1123.882 954.7803 23428.97 21841.17
20 .129 1592.294 1456.057 33135.89 33260.33
21 .109 914.9923 848.6447 19099.08 19473.66

Total number of rows: 13048

Table truncated, full table size 588 Kbytes.




Supplementary file Size Download File type/resource
GSM513365.txt.gz 4.0 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap