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Sample GSM5171209 Query DataSets for GSM5171209
Status Public on Mar 12, 2024
Title Normal 3
Sample type genomic
 
Source name Patient
Organism Homo sapiens
Characteristics gender: Female
tissue: HPV negative normal cervical epithelium
Growth protocol Primary uterine cervical lesions and normal ectocervix were collected from the hospital section of Chittaranjan National Cancer Institute, Kolkata, India after appropriate approval of the Institutional Ethical Committee and written informed consent from respective patients were taken.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA from cryosections (5µm) of microdissected tumor tissue specimen and ectocervix were isolated by standard phenol/chloroform method.
Label biotin
Label protocol 500ng of DNA are used for bisulfite conversion using the Zymo Research EZ-96 DNA Methylation Kit and labelling was done by standard Illumina Protocol using biotin
 
Hybridization protocol The bisulfite converted DNA extracts were hybridized to Infinium EPIC BeadChips using standard Illumina Protocol
Scan protocol Arrays were imaged using iScan System using standard recommended Illumina scanner setting
Description SAMPLE 13
Data processing GenomeStudio v2011.1 (Methylation Module 1.9.0) was used to transform the data. No normalisation was performed.
 
Submission date Mar 12, 2021
Last update date Mar 12, 2024
Contact name Susanta Roychoudhury
E-mail(s) anirbanr91@gmail.com
Organization name Saroj Gupta Cancer Centre & Research Institute
Street address Mahatma Gandhi Road, Thakurpukur
City Kolkata
State/province West Bengal
ZIP/Postal code 700063
Country India
 
Platform ID GPL23976
Series (1)
GSE168841 Genome-wide methylation profile of uterine cervical carcinoma in Indian patients

Data table header descriptions
ID_REF
VALUE Average Beta

Data table
ID_REF VALUE
cg00000029 0.2465687
cg00000103 0.566323
cg00000109 0.7554432
cg00000155 0.8891089
cg00000158 0.8739837
cg00000165 0.1203166
cg00000221 0.7102804
cg00000236 0.7698483
cg00000289 0.8097432
cg00000292 0.500426
cg00000321 0.1679911
cg00000363 0.1033463
cg00000540 0.6941764
cg00000579 0.8464192
cg00000596 0.6099935
cg00000622 0.0102691
cg00000658 0.6851056
cg00000714 0.09665283
cg00000721 0.8797556
cg00000734 0.06034534

Total number of rows: 865918

Table truncated, full table size 17819 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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