NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM519616 Query DataSets for GSM519616
Status Public on Sep 30, 2010
Title hASC_t4_rep1
Sample type RNA
 
Source name hASC pre-adipocyte, day 2
Organism Homo sapiens
Characteristics gender: female
cell type: adipose stromal cells
Treatment protocol N/A
Growth protocol hASCs were grown in MesenPRO RS medium (Invitrogen) plus 4ng/ml FGF-2 on plates coated with 10ug/cm2 collagen I (Invitrogen). Two days after confluence, the cells were placed in induction medium (DMEM/F12 supplemented with 10% FBS plus 1uM dexamethasone, 1.7uM insulin, 0.5mM IBMX, 5uM rosiglitazone, 40ng/ml BMP4, 17uM pantothenic acid, and 33uM biotin). 72h later, the medium was replaced with maintenance medium (DMEM/F12 with 10% FBS plus 1uM dexamethasone, 1.7uM insulin, 17uM pantothenic acid, and 33uM biotin) and media was replaced every two days thereafter.
Extracted molecule total RNA
Extraction protocol Total RNA were extracted using TRIzol (Invitrogen) and subjected to miRNA-DASL
Label Cy3
Label protocol As recommended by Illumina
 
Hybridization protocol As recommended by Illumina
Scan protocol As recommended by Illumina
Description no additional information
Data processing The data were extracted, background subtracted and quantile normalzied using GenomeStudio 2009 (Illumina)
 
Submission date Mar 09, 2010
Last update date Sep 07, 2010
Contact name Tarjei S Mikkelsen
Organization name Broad Institute
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL8178
Series (2)
GSE20699 MicroRNA expression profiling of human adipose stromal cell (hASC) adipogenesis
GSE20752 Comparative Epigenomic Analysis of Murine and Human Adipogenesis

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_3167304 -36.13844 0.9409066
ILMN_3168038 26.86156 0.009451054
ILMN_3167890 24904.49 3.68E-38
ILMN_3167526 -25.34897 0.8140224
ILMN_3167209 15.5984 0.04963069
ILMN_3167213 16.22998 0.04573999
ILMN_3167057 2303.651 3.68E-38
ILMN_3168313 -31.66476 0.9005663
ILMN_3166972 -14.4016 0.5844944
ILMN_3168149 10.54577 0.09095948
ILMN_3168527 -24.71739 0.8033423
ILMN_3167562 -22.71739 0.7671511
ILMN_3168099 193.7037 2.99E-37
ILMN_3168017 48.5984 0.000109336
ILMN_3167951 145.9142 1.08E-22
ILMN_3167172 77.22998 2.21E-08
ILMN_3167994 -12.08581 0.5277772
ILMN_3166997 107.8089 8.52E-14
ILMN_3166980 -12.98055 0.5498222
ILMN_3168362 69.28261 3.18E-07

Total number of rows: 734

Table truncated, full table size 22 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap