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GEO accession:
Sample GSM522407
Query DataSets for GSM522407
Status
Public on Dec 31, 2010
Title
B3K_T2
Sample type
RNA
Source name
kidney
Organism
Homo sapiens
Characteristics
tissue: tumor
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
biotin
Label protocol
standard Affy protocol
Hybridization protocol
standard Affy protocol
Scan protocol
standard Affy protocol
Description
Renal tumor, technical replicate 2
Data processing
GCRMA processed data utilizing custom CDF-files for Ensembl genes (R package hs133phsensg).
Submission date
Mar 15, 2010
Last update date
Dec 31, 2010
Contact name
Sakari Vanharanta
E-mail(s)
sakari.vanharanta@helsinki.fi
Organization name
University of Helsinki
Department
Translational Cancer Medicine Program
Lab
Vanharanta
Street address
Haartmaninkatu 8
City
Helsinki
ZIP/Postal code
00014
Country
Finland
Platform ID
GPL10184
Series (1)
GSE20896
Gene expression profile of HLRCC associated renal cell cancer
Data table header descriptions
ID_REF
VALUE
GCRMA
Data table
ID_REF
VALUE
AFFX-BioB-3_at
7.970529558
AFFX-BioB-5_at
8.068631424
AFFX-BioB-M_at
8.66514666
AFFX-BioC-3_at
10.24059997
AFFX-BioC-5_at
9.266409269
AFFX-BioDn-3_at
11.95712311
AFFX-BioDn-5_at
11.75588927
AFFX-CreX-3_at
14.47525586
AFFX-CreX-5_at
14.66234553
AFFX-DapX-3_at
9.013626775
AFFX-DapX-5_at
8.064866146
AFFX-DapX-M_at
9.071450297
AFFX-HSAC07/X00351_3_at
14.31104081
AFFX-HSAC07/X00351_5_at
12.82981357
AFFX-HSAC07/X00351_M_at
13.33786641
AFFX-HUMGAPDH/M33197_3_at
15.02709914
AFFX-HUMGAPDH/M33197_5_at
14.99117742
AFFX-HUMGAPDH/M33197_M_at
14.90348473
AFFX-HUMISGF3A/M97935_3_at
10.50368999
AFFX-HUMISGF3A/M97935_5_at
8.313306041
Total number of rows:
27728
Table truncated, full table size
867 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM522407.CEL.gz
4.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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