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Sample GSM52457 Query DataSets for GSM52457
Status Public on Jun 03, 2005
Title trimethylated K4 histone 3 in HeLa cell, 0 minute - rep1 of 3
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using trimethyl-H3K4 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of trimethyl-H3K4 binding using RenLab ENCODE PCR tiling array. Array ID is ENC472. Replicate 1 of 3.
 
Submission date May 25, 2005
Last update date Jun 24, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2730 ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells

Data table header descriptions
ID_REF
VALUE log2 ratio
STATISTICS X-statistics
P-VAL p-value calculated using single array error model
F635_INT normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN F635 median intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD
1 -0.119296 -4.50680983e-02 8.32318655e-01 417.64541 453.64840 608 656 245 63 72 50 708 725 175 146 150 45
2 0.023605 9.13820009e-03 4.22564689e-01 704.48414 693.05148 935 947 319 67 74 50 880 893 239 149 151 44
3 -0.132924 -5.25451757e-02 8.69323119e-01 1604.95828 1759.85890 1855 1788 588 63 74 55 1747 1649 419 148 150 44
4 -0.019501 -7.34391601e-03 5.62370625e-01 683.80840 693.11405 904 924 384 66 76 51 915 899 305 152 154 46
5 0.031792 1.23376852e-02 3.95994619e-01 786.43146 769.29076 1027 1019 349 63 75 55 967 945 256 147 148 42
6 0.017538 6.77448206e-03 4.42430351e-01 632.84107 625.19455 840 879 308 63 73 53 838 846 199 148 150 46
7 0.175001 6.26763012e-02 9.01619399e-02 351.83232 311.64136 595 614 256 65 76 54 600 585 166 147 149 48
8 -0.066364 -2.62344424e-02 7.12527329e-01 1014.99938 1062.78014 1213 1234 358 64 74 53 1187 1164 281 151 152 43
9 0.028010 1.02304374e-02 4.13448038e-01 268.11631 262.96099 430 460 187 64 75 53 524 524 126 148 153 47
10 0.437005 1.59144214e-01 3.34667861e-04 263.42771 194.58521 273 298 155 67 78 58 328 329 93 144 147 43
11 -0.177846 -6.59832988e-02 9.20796327e-01 471.83518 533.73687 681 709 309 68 81 62 757 792 232 147 154 59
12 0.109861 4.40926311e-02 1.72964019e-01 1966.47462 1822.28691 2174 2143 499 69 84 73 1692 1665 307 151 157 62
13 0.067306 2.60747235e-02 2.88637646e-01 579.81299 553.38437 796 836 278 65 76 53 784 796 158 151 153 48
14 0.120776 4.44467249e-02 1.71034278e-01 560.91936 515.87358 814 824 345 67 103 196 798 764 268 149 334 1184
15 0.235406 8.64303852e-02 3.23357663e-02 461.23196 391.79155 766 743 283 66 75 48 668 663 195 147 149 43
16 0.105342 4.02769514e-02 1.94631800e-01 808.40603 751.48191 1049 1045 408 65 75 52 945 931 277 151 154 45
17 0.094057 3.59284726e-02 2.21243231e-01 707.82053 663.14600 949 959 374 70 78 52 872 871 227 152 154 43
18 0.296535 1.03526381e-01 1.34500924e-02 271.82472 221.32121 439 427 194 68 76 54 439 438 153 151 152 44
19 -0.111353 -4.44554115e-02 8.29012889e-01 1858.77113 2007.92107 2058 2021 563 66 77 54 1802 1801 398 149 150 45
20 -0.040186 -1.57897073e-02 6.32136864e-01 940.46785 967.03249 1148 1166 372 69 78 51 1079 1093 268 151 152 47

Total number of rows: 25392

Table truncated, full table size 2758 Kbytes.




Supplementary file Size Download File type/resource
GSM52457.gpr.gz 2.1 Mb (ftp)(http) GPR
GSM52457_532.tif.gz 52.8 Mb (ftp)(http) TIFF
GSM52457_635.tif.gz 52.4 Mb (ftp)(http) TIFF

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