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Sample GSM52458 Query DataSets for GSM52458
Status Public on Jun 03, 2005
Title trimethylated K4 histone 3 in HeLa cell, 0 minute - rep2 of 3
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using trimethyl-H3K4 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of trimethyl-H3K4 binding using RenLab ENCODE PCR tiling array. Array ID is ENC762. Replicate 2 of 3.
 
Submission date May 25, 2005
Last update date Jun 24, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2730 ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells

Data table header descriptions
ID_REF
VALUE log2 ratio
STATISTICS X-statistics
P-VAL p-value calculated using single array error model
F635_INT normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN F635 median intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD
1 0.172141 6.61909986e-02 1.97984103e-01 694.62271 616.49455 1145 1150 301 64 73 60 1167 1150 246 151 156 59
2 0.158773 6.22140879e-02 2.12480720e-01 1203.46787 1078.05009 1572 1591 444 63 73 60 1515 1495 328 152 155 55
3 -0.245446 -9.78264770e-02 8.95177498e-01 3722.62016 4413.01356 4010 3911 1017 65 76 80 3903 3731 879 147 152 62
4 -0.059707 -2.35404834e-02 6.18630849e-01 1736.78955 1810.17653 2094 2050 612 65 74 81 2034 2000 531 148 153 63
5 -0.030890 -1.22717117e-02 5.62525093e-01 1944.82431 1986.91515 2228 2239 613 64 84 137 2130 2116 507 146 159 110
6 -0.053656 -2.06824704e-02 6.04585885e-01 1604.44941 1665.24538 2003 1927 739 61 69 52 2015 1898 628 147 155 163
7 -3.098794 -4.16980431e-01 9.99999955e-01 1145.33448 9812.10602 115 1620 3318 62 68 45 242 7878 16747 148 152 147
8 -0.271917 -1.07776686e-01 9.16536445e-01 1878.19882 2267.75831 2207 2174 553 66 83 114 2367 2300 523 145 157 102
9 -0.261888 -9.02863007e-02 8.76536510e-01 276.92259 332.04316 693 697 248 65 76 80 852 871 205 151 156 75
10 0.036792 1.01154976e-02 4.48392896e-01 127.84705 124.62786 458 454 200 66 73 47 496 504 124 152 153 46
11 -0.110045 -3.90306934e-02 6.91651063e-01 343.84430 371.09808 788 792 269 63 70 46 924 916 216 146 148 45
12 -0.197725 -7.97378671e-02 8.46744635e-01 2266.13459 2599.00420 2528 2528 428 63 73 79 2547 2531 349 150 156 82
13 0.026889 1.06547610e-02 4.45658336e-01 1069.88737 1050.13114 1465 1476 356 64 83 135 1488 1473 274 150 163 122
14 0.182580 6.98572227e-02 1.85163757e-01 1125.10360 991.35811 1537 1523 521 62 76 68 1491 1429 395 149 157 67
15 0.227126 8.03543504e-02 1.51393102e-01 613.05678 523.75588 1106 1074 414 62 69 46 1052 1066 357 149 151 46
16 0.126439 4.85953616e-02 2.66578329e-01 982.99051 900.50757 1458 1398 460 62 70 50 1405 1368 332 151 153 49
17 0.048347 1.89030282e-02 4.04229145e-01 1136.33491 1098.88567 1549 1533 443 64 71 52 1563 1508 361 150 153 50
18 0.169708 5.92300635e-02 2.23754129e-01 328.63138 292.16079 752 774 248 63 71 54 800 816 198 151 154 54
19 -0.073345 -2.90965558e-02 6.45477438e-01 2196.60157 2311.16156 2556 2453 692 61 68 49 2427 2328 619 150 153 50
20 -0.079877 -3.19225350e-02 6.58869456e-01 1654.30901 1748.48515 1977 1974 507 68 84 118 1971 1956 321 150 160 92

Total number of rows: 25392

Table truncated, full table size 2785 Kbytes.




Supplementary file Size Download File type/resource
GSM52458.gpr.gz 2.1 Mb (ftp)(http) GPR
GSM52458_532.tif.gz 11.4 Mb (ftp)(http) TIFF
GSM52458_635.tif.gz 51.6 Mb (ftp)(http) TIFF

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